PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016510379.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 258aa    MW: 28403.6 Da    PI: 6.9308
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016510379.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.78e-19176210135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  XP_016510379.1 176 CSHCGVQKTPQWRAGPMGAKTLCNACGVRFKSGRL 210
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.1E-721254IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.503170206IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-17170224IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.19E-14172233No hitNo description
Gene3DG3DSA:3.30.50.104.1E-15174208IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.44E-14175223No hitNo description
PROSITE patternPS003440176201IPR000679Zinc finger, GATA-type
PfamPF003201.0E-16176210IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDGTFDEFLV DEFLDFSNNG SAEDEEEEHP PGYNGKKPEK VEAENITNLS GKQEFSELNF  60
PENDEDNLEW LAHFVEDSFT HTAGKLLNQS VQDNKSCFAT PVQTGARTKH TAAARVWSLP  120
LTESASTSTS SSSTTTTSFL SSPCFIHTAE SIVRKPAAVN KRRKKTAGGV VQPRRCSHCG  180
VQKTPQWRAG PMGAKTLCNA CGVRFKSGRL LPEYRPACSP TFSSELHSNN HRKVLEMRRK  240
MEVEGGGLAL SGSEFLKN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800952.10.0PREDICTED: GATA transcription factor 5-like
RefseqXP_016510379.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH573e-55GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A1S4DAZ00.0A0A1S4DAZ0_TOBAC; GATA transcription factor
TrEMBLA0A1U7YA070.0A0A1U7YA07_NICSY; GATA transcription factor
STRINGXP_009800952.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.25e-56GATA transcription factor 5