PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016510802.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 244aa MW: 27554.9 Da PI: 5.684

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016510802.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	46.7	5.7e-15	65	117	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs ++ Lr+llP + ++kKls ++ ++ +YI +Lq XP_016510802.1 65 KKLNHNASERDRRKKINSLYSSLRSLLPAsD---HAKKLSIPSTISRVLKYIPELQ 117 6789***********************66...9999*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.303	64	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-12	65	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.71E-6	65	121	No hit	No description
SuperFamily	SSF47459	9.81E-16	65	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-13	65	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-10	70	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 244 aa Download sequence Send to blast
MLAVSSSNNF GWLLEDPISY ELNMTTSSDS VAALHPSSQT RLLEHCDSKK FDQINNDDQP 60 DQMVKKLNHN ASERDRRKKI NSLYSSLRSL LPASDHAKKL SIPSTISRVL KYIPELQNEV 120 EKLIEKKEDL TSRTISNKEN SADFNKQKRR GGNDSSSLVI SASEVGDKEV VIQISTLKIN 180 KGSFAEAVSD LEDEGLLLLN SSSFETFEDR VFHTLHFQVQ GTMVVELDTL RDKLSSYFQK 240 EDKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009785053.1	1e-178	PREDICTED: transcription factor ORG3-like
Refseq	XP_016510802.1	1e-178	PREDICTED: transcription factor ORG3-like
TrEMBL	A0A1S4DBJ1	1e-176	A0A1S4DBJ1_TOBAC; transcription factor ORG3-like
TrEMBL	A0A1U7X2J9	1e-176	A0A1U7X2J9_NICSY; transcription factor ORG3-like
STRING	XP_009785053.1	1e-177	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2226	22	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G56970.1	2e-47	bHLH family protein