PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016511290.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Nin-like

Protein Properties

Length: 715aa MW: 78049.7 Da PI: 7.1069

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016511290.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	309	360	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ XP_016511290.1 309 AEKHVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 360 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.234	292	380	IPR003035	RWP-RK domain
Pfam	PF02042	2.8E-26	313	360	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.19E-22	612	698	No hit	No description
Pfam	PF00564	4.8E-19	615	696	IPR000270	PB1 domain
PROSITE profile	PS51745	20.581	615	697	IPR000270	PB1 domain
SMART	SM00666	1.1E-23	615	697	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	6.8E-25	615	697	No hit	No description
CDD	cd06407	2.05E-33	616	696	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 715 aa Download sequence Send to blast
LVGPLSIDFC ATGPWGFTVI KKRRRKEAVN LRSIAPPRLH SQTLSKNQRA ALAEITDVLR 60 AVCHAHKLPL ALTWIPCSVT EGEGDESIRV LARGCNASSN EKCVLCAEDT ACYVSDKEMQ 120 GFVHACMEHY LEEGEGIVGK ALQSNHPFFY PDVKEYHISE YPLVHHARKF GLNAAVAIRL 180 RSTFTGNDDY ILEFFLPISM KGSTEQQLLL NNLSGTMQRI CRSLRTVSDA ELVGQGATFG 240 LQDGFAPNLP PITLSRRNSQ HSLDSNSNSA SVAPLGVSDS KSAGMQADGC REQAMIGSRR 300 QMEKKRSTAE KHVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV 360 NRSLKKIQTV LESVQGVEGG LKFDPATGSL VPASSIIQDF DAQQSIFFPC KDVSVKNPNS 420 VFQDAVSVPS TPGIDKENSM VKMEEDSYVD GNQLGQSNHI NTSSFKGGNK SSIPVSGFCY 480 EPKLAALDAM TSRPASQTML LTNSRNASLG SFHTKEGCRR WGLDNDTMDN FECHFTSQCS 540 YSKAAGDDGD TKIKGDNEMD GDGGVIEHNQ ASSSAMTDSS NGSESMMNGS SSSSRSHGAR 600 KHSKVEANFG DSGSTITVKA TYKEDTTRFK FEPSAGCFQL YEEVAKRFKL QTGTFQLKYL 660 DDEEEWVMLV NDADLHECLE ILDFVGGRTI KFLVRDTPYA MGSSGSSNCF LASGS

Sequence ? help Back to Top

Protein Sequence Length: 715 aa Download sequence Send to blast

LVGPLSIDFC ATGPWGFTVI KKRRRKEAVN LRSIAPPRLH SQTLSKNQRA ALAEITDVLR  60
AVCHAHKLPL ALTWIPCSVT EGEGDESIRV LARGCNASSN EKCVLCAEDT ACYVSDKEMQ  120
GFVHACMEHY LEEGEGIVGK ALQSNHPFFY PDVKEYHISE YPLVHHARKF GLNAAVAIRL  180
RSTFTGNDDY ILEFFLPISM KGSTEQQLLL NNLSGTMQRI CRSLRTVSDA ELVGQGATFG  240
LQDGFAPNLP PITLSRRNSQ HSLDSNSNSA SVAPLGVSDS KSAGMQADGC REQAMIGSRR  300
QMEKKRSTAE KHVSLSVLQQ YFSGSLKDAA KSIGVCPTTL KRICRQHGIS RWPSRKINKV  360
NRSLKKIQTV LESVQGVEGG LKFDPATGSL VPASSIIQDF DAQQSIFFPC KDVSVKNPNS  420
VFQDAVSVPS TPGIDKENSM VKMEEDSYVD GNQLGQSNHI NTSSFKGGNK SSIPVSGFCY  480
EPKLAALDAM TSRPASQTML LTNSRNASLG SFHTKEGCRR WGLDNDTMDN FECHFTSQCS  540
YSKAAGDDGD TKIKGDNEMD GDGGVIEHNQ ASSSAMTDSS NGSESMMNGS SSSSRSHGAR  600
KHSKVEANFG DSGSTITVKA TYKEDTTRFK FEPSAGCFQL YEEVAKRFKL QTGTFQLKYL  660
DDEEEWVMLV NDADLHECLE ILDFVGGRTI KFLVRDTPYA MGSSGSSNCF LASGS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	20	25	KKRRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975523	0.0	HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016511290.1	0.0	PREDICTED: protein NLP9-like, partial
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	A0A1S4DCW7	0.0	A0A1S4DCW7_TOBAC; protein NLP9-like
STRING	XP_009795771.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]