PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511348.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 254aa    MW: 28827.8 Da    PI: 5.3778
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511348.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.19.2e-2023105997
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                         + +l++p  f++ ++g+   +   +l+d+ grsW+v +  +k+++ +++ +GW +Fv++n+Lk g+f++F+++g+s+f  +vk++
  XP_016511348.1  23 PQICNPQLRIPPAFLKFFNGD--IPANSMLQDLAGRSWKVVV--EKNDNDFFFMGGWPDFVRDNNLKFGEFLTFSYVGNSNF--YVKIY 105
                     55567789*******988666..45568**************..**********************************9999..88886 PP
2B3438.1e-14161252599
                     -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +++++ +++rl +   f +++     + ++++  l++ +  sW v +    +s+r +l++G  eF  +n L+egD++ F+l+++++f l v+++
  XP_016511348.1 161 VIKPSYIRKKRLNVQAAFGNRYlnR-GQGQNFEAALQT-DRGSWPVSV---HNSDRLILQTGFGEFIASNALREGDVCQFMLIDEEKFMLEVSIR 250
                     45677777788********999962.456889999887.6679*****...677899*************************************9 PP

                     -S CS
              B3  98 rk 99 
                     r+
  XP_016511348.1 251 RQ 252
                     85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.32E-2511108IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-2113108IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-1915105No hitNo description
SMARTSM010191.9E-1817108IPR003340B3 DNA binding domain
PfamPF023623.2E-1825105IPR003340B3 DNA binding domain
PROSITE profilePS5086313.70430108IPR003340B3 DNA binding domain
CDDcd100172.71E-9156251No hitNo description
SuperFamilySSF1019363.14E-11156251IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-13156247IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-5158253IPR003340B3 DNA binding domain
PfamPF023621.4E-11161252IPR003340B3 DNA binding domain
PROSITE profilePS508638.445201253IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVTSIEQVTI PDHLPEFFKI YHPQICNPQL RIPPAFLKFF NGDIPANSML QDLAGRSWKV  60
VVEKNDNDFF FMGGWPDFVR DNNLKFGEFL TFSYVGNSNF YVKIYGINGS LKRDVTAIKE  120
PELHPLDEEI VQEIGTAAPP ADQALNGSGD LVVYAPSFDI VIKPSYIRKK RLNVQAAFGN  180
RYLNRGQGQN FEAALQTDRG SWPVSVHNSD RLILQTGFGE FIASNALREG DVCQFMLIDE  240
EKFMLEVSIR RQLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A1e-131610810102At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511348.10.0PREDICTED: B3 domain-containing protein At3g06220-like isoform X1
TrEMBLA0A1S4DDC80.0A0A1S4DDC8_TOBAC; B3 domain-containing protein At3g06220-like isoform X1
STRINGXP_009613984.11e-122(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA126331320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-19B3 family protein