PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511349.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 206aa    MW: 23320.4 Da    PI: 5.0925
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511349.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-161573797
                    EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                    +l+d+ grsW+v +  +k+++ +++ +GW +Fv++n+Lk g+f++F+++g+s+f  +vk++
  XP_016511349.1  1 MLQDLAGRSWKVVV--EKNDNDFFFMGGWPDFVRDNNLKFGEFLTFSYVGNSNF--YVKIY 57
                    699***********..**********************************9999..88886 PP
2B343.75e-14113204599
                     -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
              B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      +++++ +++rl +   f +++     + ++++  l++ +  sW v +    +s+r +l++G  eF  +n L+egD++ F+l+++++f l v+++
  XP_016511349.1 113 VIKPSYIRKKRLNVQAAFGNRYlnR-GQGQNFEAALQT-DRGSWPVSV---HNSDRLILQTGFGEFIASNALREGDVCQFMLIDEEKFMLEVSIR 202
                     45677777788********999962.456889999887.6679*****...677899*************************************9 PP

                     -S CS
              B3  98 rk 99 
                     r+
  XP_016511349.1 203 RQ 204
                     85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023628.5E-15157IPR003340B3 DNA binding domain
SMARTSM010190.0015160IPR003340B3 DNA binding domain
PROSITE profilePS5086315.256160IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.8E-15260IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-17260IPR015300DNA-binding pseudobarrel domain
CDDcd100175.48E-15257No hitNo description
CDDcd100171.54E-9108203No hitNo description
Gene3DG3DSA:2.40.330.105.0E-13108199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-11108203IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.8E-5110205IPR003340B3 DNA binding domain
PfamPF023628.6E-12113204IPR003340B3 DNA binding domain
PROSITE profilePS508638.445153205IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MLQDLAGRSW KVVVEKNDND FFFMGGWPDF VRDNNLKFGE FLTFSYVGNS NFYVKIYGIN  60
GSLKRDVTAI KEPELHPLDE EIVQEIGTAA PPADQALNGS GDLVVYAPSF DIVIKPSYIR  120
KKRLNVQAAF GNRYLNRGQG QNFEAALQTD RGSWPVSVHN SDRLILQTGF GEFIASNALR  180
EGDVCQFMLI DEEKFMLEVS IRRQLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511348.11e-151PREDICTED: B3 domain-containing protein At3g06220-like isoform X1
RefseqXP_016511349.11e-152PREDICTED: B3 domain-containing protein REM19-like isoform X2
TrEMBLA0A1S4DDC81e-149A0A1S4DDC8_TOBAC; B3 domain-containing protein At3g06220-like isoform X1
TrEMBLA0A1S4DDR31e-150A0A1S4DDR3_TOBAC; B3 domain-containing protein REM19-like isoform X2
STRINGXP_009613984.12e-83(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.15e-12B3 family protein