PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511408.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 801aa    MW: 88122.2 Da    PI: 6.3695
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511408.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3604.1e-19277376198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   +++  +  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F++++  +++
  XP_016511408.1 277 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSDGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFSRID-PGGK 369
                     99**************************556666778***************9989999999***9.********************887.7887 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_016511408.1 370 LVMGFRK 376
                     8888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-29274380IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-21274377IPR015300DNA-binding pseudobarrel domain
CDDcd100175.52E-24275376No hitNo description
SMARTSM010193.1E-22277377IPR003340B3 DNA binding domain
PfamPF023622.0E-16277376IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237277378IPR003340B3 DNA binding domain
PROSITE profilePS5105013.76501555IPR011124Zinc finger, CW-type
PfamPF074963.5E-10506552IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MGDSGWRECK MCGKHLHCGC IASKYLFEYL DFGGVGCISC ARCLDDHSMR PMQVPADDFR  60
DSAFGTNFIQ PLHVEKGVDK TNFDKGRLPI VNNIMEISEP GQPFQSQKDE NNVSLGKTKQ  120
EKVLPVGDVS TCFSNLNQQS IASLFREQDN SKPNQGVKEM YDTTNQPSLD FSLSTPVGCS  180
SSGLSFPDGG VEGREHEKTP FQQGLRTRHI LLKPLKPSPS FGSDSNKELP SQTRIARPPA  240
EGRGGRNQLL PRYWPRITDQ ELCQLSGDLN SAIVPLFEKV LSASDAGRIG RLVLPKACAE  300
AYFPPINQSD GLPIRIQDIK GKEWTFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDTVT  360
FSRIDPGGKL VMGFRKATNS VETQDPQSSH LPDGSGSADT SFTGLTENLN NGGRTSADSV  420
HRQVPVSEKK KTTNIGSKNK RLLMHADDAM ELRITWEESQ ELLRPPPTTQ PTILVIEDCE  480
FEAYDEPPVF GKQTIFTSRP SGDQEQWAQC DSCSKWRRLP MHVLLPPKWT CSDNIWDSNS  540
FLYRCSCSAP EEIKAKELEA FFRVSKGHKR QKIAGKNEDC EPSGLNALAT VAVLGDSISD  600
LGEPLVGATT KHPRHRPGCT CIVCIQPPSG KGKHQPTCKC NACLSAERRF KTLMLRKKKK  660
QSEREAEVAQ AKDQVPPKDG SETDGASGAE LMMQTSHSEN ERNTNGDHME KVGAGKGQLD  720
LNCHPNREDE MLIEAAAGIS MTSLINAADL PLDMYQTQNG LATLDKCLLS LATAGSEGQQ  780
PDNGCVRPAD AQVQENNGDN G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-692553842131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511408.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X1
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLA0A1S4DDJ10.0A0A1S4DDJ1_TOBAC; B3 domain-containing protein Os07g0679700-like isoform X1
STRINGXP_009595178.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14912365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]