PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511410.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 756aa    MW: 83486.3 Da    PI: 6.5524
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.13.7e-19277376198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+ sd+++ grlvlpk +ae++   +++  +  ++++d +g++W++++++  +++s++yvl+ G     +  +L++gD+v+F++++  +++
  XP_016511410.1 277 FEKVLSASDAGRIGRLVLPKACAEAYfpPINQSDGLPIRIQDIKGKEWTFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDTVTFSRID-PGGK 369
                     99**************************556666778***************9989999999***9.********************887.7887 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     lv+++++
  XP_016511410.1 370 LVMGFRK 376
                     8888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-21274377IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-29274384IPR015300DNA-binding pseudobarrel domain
CDDcd100174.85E-24275376No hitNo description
PfamPF023621.8E-16277376IPR003340B3 DNA binding domain
SMARTSM010193.1E-22277377IPR003340B3 DNA binding domain
PROSITE profilePS5086311.237277378IPR003340B3 DNA binding domain
PROSITE profilePS5105013.76456510IPR011124Zinc finger, CW-type
PfamPF074963.3E-10461507IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MGDSGWRECK MCGKHLHCGC IASKYLFEYL DFGGVGCISC ARCLDDHSMR PMQVPADDFR  60
DSAFGTNFIQ PLHVEKGVDK TNFDKGRLPI VNNIMEISEP GQPFQSQKDE NNVSLGKTKQ  120
EKVLPVGDVS TCFSNLNQQS IASLFREQDN SKPNQGVKEM YDTTNQPSLD FSLSTPVGCS  180
SSGLSFPDGG VEGREHEKTP FQQGLRTRHI LLKPLKPSPS FGSDSNKELP SQTRIARPPA  240
EGRGGRNQLL PRYWPRITDQ ELCQLSGDLN SAIVPLFEKV LSASDAGRIG RLVLPKACAE  300
AYFPPINQSD GLPIRIQDIK GKEWTFQFRF WPNNNSRMYV LEGVTPCIQN MQLQAGDTVT  360
FSRIDPGGKL VMGFRKATNS VETQKKTTNI GSKNKRLLMH ADDAMELRIT WEESQELLRP  420
PPTTQPTILV IEDCEFEAYD EPPVFGKQTI FTSRPSGDQE QWAQCDSCSK WRRLPMHVLL  480
PPKWTCSDNI WDSNSFLYRC SCSAPEEIKA KELEAFFRVS KGHKRQKIAG KNEDCEPSGL  540
NALATVAVLG DSISDLGEPL VGATTKHPRH RPGCTCIVCI QPPSGKGKHQ PTCKCNACLS  600
AERRFKTLML RKKKKQSERE AEVAQAKDQV PPKDGSETDG ASGAELMMQT SHSENERNTN  660
GDHMEKVGAG KGQLDLNCHP NREDEMLIEA AAGISMTSLI NAADLPLDMY QTQNGLATLD  720
KCLLSLATAG SEGQQPDNGC VRPADAQVQE NNGDNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-692553842131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511410.10.0PREDICTED: B3 domain-containing protein Os07g0679700-like isoform X3
TrEMBLA0A1S4DD890.0A0A1S4DD89_TOBAC; B3 domain-containing protein Os07g0679700-like isoform X3
STRINGXP_009595178.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.10.0HSI2-like 1