PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016511420.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

G2-like

Protein Properties

Length: 234aa MW: 26723.7 Da PI: 10.6508

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016511420.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	92.6	3.4e-29	184	234	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 pr+rWt++LH+rF++ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+ XP_016511420.1 184 PRMRWTSTLHARFIHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQM 234 9*************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.15E-13	181	234	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-25	182	234	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.6E-21	184	234	IPR006447	Myb domain, plants
Pfam	PF00249	3.9E-6	185	234	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNNK PSSSSSWKRS TSNSTNENQE MDLGFWKRAL ESRNSSNNNN 60 NNNNSSCFEL SLSSNINPRP NSSQYFHHLQ NTNTNIIHSL HQNQVLNPIR GVPVYNQNPF 120 FPYDNANTTT TLPIPSSVSS FNYNHTISSS NSHSHFQSRH YHQNGLIRSR FMSRFPAKRS 180 MRAPRMRWTS TLHARFIHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-15	185	233	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-15	185	233	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-15	185	233	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-15	185	233	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-15	185	233	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-15	185	233	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-15	185	233	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-15	185	233	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FQ382790	5e-41	FQ382790.1 Vitis vinifera clone SS0ABG43YJ15.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009625992.1	1e-170	PREDICTED: probable transcription factor KAN2 isoform X4
Refseq	XP_016511420.1	1e-170	PREDICTED: probable transcription factor KAN2
Swissprot	Q9C616	1e-59	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A1S4DD99	1e-169	A0A1S4DD99_TOBAC; probable transcription factor KAN2
STRING	XP_009625989.1	1e-169	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2738	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-40	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]