PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511488.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 176aa    MW: 20009.8 Da    PI: 10.06
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15e-1949100256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     +y GVr ++ +g+++AeIrd + ng   r++lg+f+t eeAa a+++a+ +++g+
  XP_016511488.1  49 HYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFDTVEEAALAYDQAAFSMRGA 100
                     799******.**********44465..*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.23E-2748107No hitNo description
SMARTSM003801.9E-3349113IPR001471AP2/ERF domain
PROSITE profilePS5103221.33849107IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2249109IPR016177DNA-binding domain
PfamPF008476.4E-144999IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.1E-2949108IPR001471AP2/ERF domain
PRINTSPR003672.0E-95061IPR001471AP2/ERF domain
PRINTSPR003672.0E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MFDQIPRSSS SSETNSSKGS SADEEVTSYS IKRKDANTDK EELKDEEKHY IGVRKRPWGK  60
YAAEIRDSTR NGIRVWLGTF DTVEEAALAY DQAAFSMRGA LAFLNFPMEK VQESLQKIKM  120
NSSQLLDGLS PAAALKETHK MRMKNVKRRR NRKKKKKGVL VFEDLGADLL EELLMS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2948108464ATERF1
3gcc_A6e-2948108464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146156KRRRNRKKKKK
2148156RRNRKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511488.11e-127PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y94e-53ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A1S4DDS91e-126A0A1S4DDS9_TOBAC; ethylene-responsive transcription factor 1B-like
STRINGXP_009619700.13e-97(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.11e-43ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]