PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016511682.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 268aa    MW: 30508.2 Da    PI: 7.9548
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016511682.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11100152155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ h  +Er RR+++ + +  Lr+llP  +   ++K s ++  + Av+YI++L+
  XP_016511682.1 100 KKVVHRNVERHRRQEMANLLTSLRSLLPLEF--IKGKRSASDHMQIAVNYIRHLR 152
                     6788*************************65..********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-1496171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.76E-997156No hitNo description
PROSITE profilePS5088813.21199151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-10100172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0013105157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MDNYLWEIFS SKQNTEQDHD HHHQLLQIPN FQLNGFCQQD QIPNQDLIGG PREISSVNSN  60
NNYASVPTTM SSVNRSNLDN SNKGLIRRPE STISSTDDSK KVVHRNVERH RRQEMANLLT  120
SLRSLLPLEF IKGKRSASDH MQIAVNYIRH LRKNIEELDN RRKQIKNSLD NLGAENGSSS  180
TCYVHNNSVA VNTCQDGMEI LINVNSHKEE MFSLSKVLRW LLQQGLNVVS CVNSKQDEWT  240
LIRIQCQVSD ISGVSTVGLQ KKLTDLIS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754484e-39HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016511682.10.0PREDICTED: transcription factor bHLH118-like
TrEMBLA0A1S4DE250.0A0A1S4DE25_TOBAC; transcription factor bHLH118-like
STRINGXP_009757518.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59824109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.12e-24bHLH family protein