PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016512203.1

Common Name

NAC6

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 229aa MW: 26316.4 Da PI: 9.5244

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016512203.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	77	4.4e-24	13	134	5	128
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 +F+P+d el+++ L k v+gk l++ee i +d+y+ ePw+L +++ +k yf ++ +kk++t+ r nr+t +g+W ++ k k++l++ ++ XP_016512203.1 13 AQFRPSDTELIMQ-LMKFVAGKCLPTEELIVFADVYSKEPWHLIGDISS-KKTHYFLTQLKKKKPTDARFNRTTGNGTWTQQNKGKKILDEdESL 105 68*******66.8999****999**********866644.5778999999**************************84555 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +g k++L + +++ ++ + W+m ey l XP_016512203.1 106 IIGFKRSLSYK-NKKDSSLNGCWLMMEYFL 134 69***98.66677799******76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	26.456	9	158	IPR003441	NAC domain
Pfam	PF02365	1.4E-11	13	133	IPR003441	NAC domain
SuperFamily	SSF101941	3.92E-24	14	157	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MPQERTKPME KTAQFRPSDT ELIMQLMKFV AGKCLPTEEL IVFADVYSKE PWHLIGDISS 60 KKTHYFLTQL KKKKPTDARF NRTTGNGTWT QQNKGKKILD EDESLIIGFK RSLSYKNKKD 120 SSLNGCWLMM EYFLADSLLR ELKSKDAKEF VICAIKKNPR SEIRGNSIAT VVEYKRFIDR 180 VVHLQTSPEE EQSTMILSNK SPVMLESTSS HVFSVEQLEP KDGMLVLAN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU753263	0.0	EU753263.1 Nicotiana tabacum NAC transcription factor (NAC6) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001313150.1	1e-171	NAC domain-containing protein 83-like
TrEMBL	B3VK74	1e-170	B3VK74_TOBAC; NAC domain-containing protein 83-like
STRING	XP_009623547.1	1e-133	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9815	7	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.1	5e-16	NAC domain containing protein 41