PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016512511.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family WRKY
Protein Properties Length: 280aa    MW: 31199.9 Da    PI: 7.7477
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016512511.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY74.61.3e-23126185258
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                     +Dgy+WrKYG K + g+++pr YYrC+ +   +C+++k v+rs+++ +v+e++Y g+H +
  XP_016512511.1 126 EDGYSWRKYGHKYILGAKHPREYYRCARRrlsSCTATKMVQRSETEASVFEVIYGGSHSC 185
                     7**************************998999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.1E-24112187IPR003657WRKY domain
PROSITE profilePS5081118.601120184IPR003657WRKY domain
SuperFamilySSF1182901.83E-21122187IPR003657WRKY domain
SMARTSM007744.6E-28125187IPR003657WRKY domain
PfamPF031061.3E-22126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGEENCWERE VVITELTKGR ELMCQLQKHF DPMKKDVCQY LSVEILSSYD KALSLLNGTA  60
LSGMNKGKQI SNPAPSSSTG KLESLHLLAD ASAKSSDRPC NSRKRKMVSR RTEYVHARSG  120
EEVPPEDGYS WRKYGHKYIL GAKHPREYYR CARRRLSSCT ATKMVQRSET EASVFEVIYG  180
GSHSCGQESK LQQNGELVAA LTKETQCDEV GRRGEISESF FPEMVSTPNT SFNNSSTGIV  240
NSNSILNMTN SDFMTTPTSA HAEGNSSAED LWTTFFSSLK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-131271841875Disease resistance protein RRS1
5w3x_D3e-131271841875Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106SRKRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016512511.10.0PREDICTED: probable WRKY transcription factor 41
TrEMBLA0A1S4DGN40.0A0A1S4DGN4_TOBAC; probable WRKY transcription factor 41
STRINGXP_009793240.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120611123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.19e-33WRKY family protein