PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016512579.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 250aa MW: 28538 Da PI: 9.8901

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016512579.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8.3e-11	78	126	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +Er+RR+++ +++Lr l+P+ +K s ++ Le+ v+YIk++ XP_016512579.1 78 VRRDVERQRRRDMARLYQRLRLLIPSkY---LMGKRSISDHLEEIVDYIKDM 126 56789*******************77...9****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-10	73	145	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.265	74	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.9E-8	76	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.2E-8	78	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MDDSDQFDFA QVENLLHLLC SPPPPPPPPP TLIPRKQDSS ASLQTQSPKR KAAITNFDQD 60 AGKGKPPKEK KNTEKKVVRR DVERQRRRDM ARLYQRLRLL IPSKYLMGKR SISDHLEEIV 120 DYIKDMRKDI EELESKRERL KEMRNICSSD HISHLAAPAS SLKSDENQDR IRVKKCKEGV 180 EISVISNLGE GLTLSKVLRV LMEEGLLVIS CVSSKINQRS LHIIQSEVNS RGDIDLVGLQ 240 FKLMSLSYKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009605333.1	0.0	PREDICTED: transcription factor bHLH120-like
Refseq	XP_016512579.1	0.0	PREDICTED: transcription factor bHLH120-like
TrEMBL	A0A1S4DH39	1e-180	A0A1S4DH39_TOBAC; transcription factor bHLH120-like
STRING	XP_009605333.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12831	11	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25410.1	4e-20	bHLH family protein