PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016512702.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 219aa    MW: 25216.7 Da    PI: 8.7748
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016512702.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.33.3e-07726222
             AP2  2 gykGVrwdkkrgrWvAeIrdp 22
                    +y+GVr+++ +g+Wv+eIr+p
  XP_016512702.1  7 RYRGVRQRH-WGSWVSEIRHP 26
                    69******9.*********97 PP
2AP229.32.2e-0956832855
             AP2 28 rkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++r++lg+f tae+Aa+a+++a++ + g
  XP_016512702.1 56 KTRIWLGTFETAEDAARAYDEAARFMCG 83
                    49*********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.76E-29693No hitNo description
PfamPF008473.5E-8783IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-33791IPR001471AP2/ERF domain
SMARTSM003803.8E-35797IPR001471AP2/ERF domain
PROSITE profilePS5103220.771791IPR001471AP2/ERF domain
PRINTSPR003673.8E-11819IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-134593IPR016177DNA-binding domain
PRINTSPR003673.8E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLLL QKYKIKQTSY NRPLWSEPFP DPAHSKTRIW  60
LGTFETAEDA ARAYDEAARF MCGQRARTNF PYNPNMPQTS SSKILSANLT AKLHKCYMAS  120
LQMAKTSAQE HRIQSSHVDV LKNAPIQEHV AYEMKQQMVV PKTSVLTHEE AANLGVKKVQ  180
DVESIPQFVK PLEDDHIEQM IEELLDYGSI ELCSNVTSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-16695467ATERF1
3gcc_A2e-16695467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754457e-74HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009601360.11e-166PREDICTED: ethylene-responsive transcription factor ERF003-like isoform X1
RefseqXP_016512702.11e-166PREDICTED: ethylene-responsive transcription factor ERF003-like isoform X1
SwissprotQ94AW53e-67ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A1S4DGU01e-165A0A1S4DGU0_TOBAC; ethylene-responsive transcription factor ERF003-like isoform X1
STRINGXP_009601360.11e-166(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.14e-58ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]