PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016512749.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 312aa MW: 35291 Da PI: 5.0667

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016512749.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.9	3.4e-38	10	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaCk++rrkC+++Cvlapyfpa+qpk f+n+h+lFG+ n++k+l++l++++ + dam+s+++e++++ r PvyG+v+ i +l+qql+ + +el XP_016512749.1 10 ACAACKYQRRKCSSECVLAPYFPANQPKMFQNAHRLFGVCNIMKILRQLDDDDqKADAMKSIIFESDMWERFPVYGCVEYICHLRQQLQLALEEL 104 7**********************************************655549*************************************9 PP DUF260 95 allkee 100 +++ ++ XP_016512749.1 105 HYVYAQ 110 998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.074	9	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-37	10	106	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MTVKGGTSPA CAACKYQRRK CSSECVLAPY FPANQPKMFQ NAHRLFGVCN IMKILRQLDD 60 DDQKADAMKS IIFESDMWER FPVYGCVEYI CHLRQQLQLA LEELHYVYAQ LALYREQQQQ 120 QLALQRGVTS EIPFVNGISM GPFFTSEGEC SEGGPKTNLL GSDSLFGHNS SITFAASDHV 180 IFGFGVRDDH QRDISHEYEC LINPFNNIMA DDRQSYVETK EACDSSSESS WKDTQSLENL 240 SQNELRNAAA CLSLTSRVTL ETIAVALQLW GGDLVRSARE LISICSLYRF FDSELLRHVP 300 DLTLVVLEHL RM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-23	2	114	4	114	LOB family transfactor Ramosa2.1
5ly0_B	1e-23	2	114	4	114	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016512749.1	0.0	PREDICTED: LOB domain-containing protein 11-like
TrEMBL	A0A1S4DHL2	0.0	A0A1S4DHL2_TOBAC; LOB domain-containing protein 11-like
STRING	XP_009768780.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	1e-36	LOB domain-containing protein 27