PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016512873.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 244aa    MW: 28508.2 Da    PI: 5.1063
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016512873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.52.6e-2311293128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     +G+rFhPt+ el+ ++Lk+ ++g++l+ e   +k +diy    Pw++  + ++ eek  yfF++ +k++++ +r +r+ + g+Wk +    ++++
  XP_016512873.1   1 MGVRFHPTEAELI-NFLKRFLKGEPLPSECPnFKLTDIYGDqPPWEIFVASDHpEEKVRYFFTRLKKQKSEHTRVRRTCAFGTWKGQTGIDPIKN 94 
                     59***********.9**********88755559999***87368***743333255566**************************8888899**9 PP

             NAM  95 kkgelvglkktLvfykgrapkgektd.Wvmheyrl 128
                     +kg++vg ++ + f + r+++ge+ + W+m+ey++
  XP_016512873.1  95 SKGTVVGFRRCFKFQTSRSKEGENNKiWLMKEYSV 129
                     9**************999999986545******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.051152IPR003441NAC domain
SuperFamilySSF1019416.02E-252151IPR003441NAC domain
PfamPF023653.3E-152129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGVRFHPTEA ELINFLKRFL KGEPLPSECP NFKLTDIYGD QPPWEIFVAS DHPEEKVRYF  60
FTRLKKQKSE HTRVRRTCAF GTWKGQTGID PIKNSKGTVV GFRRCFKFQT SRSKEGENNK  120
IWLMKEYSVG DDFFRENNIP KEDIVVCRIK KNIRAEKNHG VTIEEQDVAK IIEVMLYEPD  180
EDYCTTVQPA PICQAEHQVM DETQKMNEHN NSSYISDCSN YQEEIYWADD VLLDIDDFGD  240
IICS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7532600.0EU753260.1 Nicotiana tabacum NAC transcription factor (NAC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009630787.10.0PREDICTED: protein SOMBRERO-like
RefseqXP_016512873.10.0PREDICTED: protein SOMBRERO-like
TrEMBLA0A1S4DHN00.0A0A1S4DHN0_TOBAC; protein SOMBRERO-like
STRINGXP_009630787.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8141386
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.12e-17NAC domain containing protein 2