PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016513140.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 251aa MW: 26405.3 Da PI: 8.518

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016513140.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	122.4	5.3e-38	33	125	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.....k 89 +kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s ++s+ +ss + k XP_016513140.1 33 VKKPPAKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStLSVSLRNSSVSSSLSapldyK 125 79******************************************************************8886444443333322222334321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-34	38	129	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.675	38	92	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MSTSVEANGA TLSSHTQQQQ HSSDAGNSGA LVVKKPPAKD RHSKVDGRGR RIRMPIVCAA 60 RVFQLTRELG HKSDGQTIEW LLRQAEPSII AATGTGTIPA SFSTLSVSLR NSSVSSSLSA 120 PLDYKSSSQP SISPPPFLLG KRLRPEDDDG SGDKDDASNG ATVVGPTAGF WAVPARPDFG 180 QVWSFAPPPP PPEMVAPTHS SAARFLQQQM GEESAARLGN YFPIAQGHLN LLASLSGSAP 240 PSSGRRDDDG N

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016513140.1	0.0	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	1e-82	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1S4DIB5	0.0	A0A1S4DIB5_TOBAC; transcription factor TCP7-like
STRING	XP_009760508.1	1e-150	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3951	22	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-65	TCP family protein