PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016513302.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 180aa MW: 20709.2 Da PI: 10.2715

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016513302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	29.4	1e-09	15	54	1	40
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 k+ ++k+ +v + + ++ + K A LS+LC++++a+iif XP_016513302.1 15 KFLKDKRAEKVALFNKQKALSKRAMDLSILCGIDIAIIIF 54 57789999*******************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0049	1	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	13.105	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	3.4E-13	9	79	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.3E-7	18	55	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MARMTSQMKN KSEKKFLKDK RAEKVALFNK QKALSKRAMD LSILCGIDIA IIIFPITAER 60 FMFGNPNVES VVERFSQAKQ PFYRMLSRKT THEKAGCGDE KDTMKKKKKK AINEKEKGES 120 TLEIFKPTNL ERLEKLKQEI DELERDLTEK IDEVRSKIGV TDPKFLPEMN ATMSSAMPSN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016513302.1	1e-128	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A1S4DIW3	1e-127	A0A1S4DIW3_TOBAC; agamous-like MADS-box protein AGL29
STRING	XP_009597574.1	9e-99	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2297	12	58