PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513364.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 206aa    MW: 22409.9 Da    PI: 10.1848
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513364.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.61.7e-063312255
                    HHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 22 eLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     L++l+P+a      K +Ka++L ++++Y+k+Lq
  XP_016513364.1  3 ALQKLVPNA-----SKTDKASMLDEVIKYLKQLQ 31
                    799*****9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-9155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-7139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-7135No hitNo description
PROSITE profilePS5088811.788130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MKALQKLVPN ASKTDKASML DEVIKYLKQL QAQIQLISSA RNMESQMMMQ LPLGMQLPHI  60
QMPLLARMGM GVNLGMTPGM LNNMTANLAR AAATTPHQSL TAPFIYPTSI ATSCPPFMSP  120
AFAMAPTIPT PPQANGDASA SRAAVASSVT NSFPFNDPRS AFLAQSMNME FNNQLAAQYM  180
QQADNQSMQT RSKNLNQGNL NQRQTE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009801833.11e-146PREDICTED: transcription factor PIF7
RefseqXP_016513364.11e-147PREDICTED: transcription factor UNE10-like
TrEMBLA0A1S4DJA01e-145A0A1S4DJA0_TOBAC; transcription factor UNE10-like
TrEMBLA0A1U7YFB61e-145A0A1U7YFB6_NICSY; transcription factor PIF7
STRINGXP_009801833.11e-145(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.18e-15bHLH family protein