PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513472.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 174aa    MW: 20265.1 Da    PI: 10.4484
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513472.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.55.6e-161646232
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCd 32
                    +ien+ nrqvtfskRrng++KKA+EL v++d
  XP_016513472.1 16 KIENQNNRQVTFSKRRNGVFKKANELDVMTD 46
                    79***************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.675748IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-12755IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-16966IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-13929IPR002100Transcription factor, MADS-box
PfamPF003191.0E-141647IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-132944IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSTRWTKVRK SVHLAKIENQ NNRQVTFSKR RNGVFKKANE LDVMTDSKPY SFGHPNVNEA  60
IKKYVGEERP PSPSSPGIDD KYVQMFRKVN SRELNTRLNS LQDQLNFALN LKSKLKQMNK  120
KVESQQEWFK GPIEKMNYTE ASMLKEGLED LLLKVKNYGT ERGYGYENGK RKAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513472.11e-126PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A1S4DJD21e-125A0A1S4DJD2_TOBAC; agamous-like MADS-box protein AGL62
STRINGXP_009617678.11e-118(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA3829435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-17AGAMOUS-like 61