PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016513680.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 177aa MW: 20489.3 Da PI: 9.318

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016513680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.5	2.6e-16	16	64	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +e+k r+vtfskR++ ++ KAeE S+ ++a++ v++fs++gk ys XP_016513680.1 16 YVESKEARYVTFSKRKASLFRKAEEFSTVTGADIGVLLFSPSGKPCSYS 64 5799***************************************987777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.7E-23	7	66	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	20.647	7	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.28E-22	8	84	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-13	9	29	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.7E-19	17	63	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-13	29	44	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-13	44	65	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MARRTSKGRQ KIEMKYVESK EARYVTFSKR KASLFRKAEE FSTVTGADIG VLLFSPSGKP 60 CSYSSTSVEK ITEKFCEWKQ QNVDEGKSSV FQAFDDLCKD IQDENEKEKR RELRYKVMYP 120 GAEIPPDKER SEKLVEIKLR LDKINEAAKN HIRAQRLKFD LNVVPEYEVG ESSGTHH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016513680.1	1e-129	PREDICTED: agamous-like MADS-box protein AGL29
TrEMBL	A0A1S4DJU9	1e-128	A0A1S4DJU9_TOBAC; agamous-like MADS-box protein AGL29
STRING	XP_009779179.1	1e-128	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1780	12	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	5e-19	AGAMOUS-like 29