PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513812.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 641aa    MW: 72575 Da    PI: 5.4565
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513812.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.21.2e-2193192197
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+kvlt sd+ ++  l++p k a ++      + +k+ + +l+++d+ g++W++k+ + ++++r++lt+GW+ Fv+ ++L +gD vvF   ++++
  XP_016513812.1  93 FCKVLTASDTKSNWGLSIPQKDAVKCfplldmSRDKPIQ-ELVVKDLPGKEWRFKHVFGGHPRRHLLTNGWSAFVNGKKLVAGDLVVFL--REEN 184
                     99****************************995555564.9************************************************..4467 PP

                     E..EEEEE CS
              B3  90 felvvkvf 97 
                     +  +v+++
  XP_016513812.1 185 GDVHVGFR 192
                     76788876 PP
2Auxin_resp29.33.8e-11218272157
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsser 57 
                     a++a++++ +F+v+ +P++  s+F+++++k+++a+++ + v m f m  e  +s+e 
  XP_016513812.1 218 ASDALASQRPFSVYCKPQT--SQFIISLNKYLEAINRGLGVSMTFTMPSEVANSHES 272
                     567899***********95..9***************************99988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-3586200IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.41E-2888192IPR015300DNA-binding pseudobarrel domain
CDDcd100173.16E-1991192No hitNo description
PROSITE profilePS5086312.33793195IPR003340B3 DNA binding domain
SMARTSM010192.6E-1693195IPR003340B3 DNA binding domain
PfamPF023625.9E-1993191IPR003340B3 DNA binding domain
PfamPF065077.7E-9218271IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 641 aa     Download sequence    Send to blast
MDVPRVGEQV YYFPGLHIKQ LEQSSNQELN QGTPISDPYL KILCRVVHVR FLVEHISEEV  60
CAEINLLPKH DQTEPVNPDF YHSEIPRPQI HSFCKVLTAS DTKSNWGLSI PQKDAVKCFP  120
LLDMSRDKPI QELVVKDLPG KEWRFKHVFG GHPRRHLLTN GWSAFVNGKK LVAGDLVVFL  180
REENGDVHVG FRHLLCEKSS VEAPIASSLD IKGVLAAASD ALASQRPFSV YCKPQTSQFI  240
ISLNKYLEAI NRGLGVSMTF TMPSEVANSH ESFTCMTNEK DQMQINQFSQ NTNVFLNEDE  300
EHMEDAEAIV YSPPQHSMTP SGIGEKRHSD HTIYISPLEG NVESTCGTRK HNEVSNPAEI  360
ESIRGTEEPK AITSSSWDFN PIQGLELEDT EIIKDILPIV SQNLPLDYTV SSNTDNDHFL  420
PIMQDSEEWQ NFQGTDFPLH GQSPSENHNM QNFFNKDQQN SSKAMHPTSI SSQIPYDGPG  480
HADEKVHWEG YHVARRYIPI LNRIISQYPS TLSSFKATSP IFQSMCLEIL AELVYLLGQF  540
TTGNMDIKYH SEAKRYLRDL KLSGIEIGWL EKRLAKVEDI FSMKRISIRR QELILGIEDT  600
TATLRLMNEE LGSLEKDLQK LSSNINLKNP AEDHPILEGL L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-73126232296Auxin response factor 1
4ldw_A1e-73126232296Auxin response factor 1
4ldw_B1e-73126232296Auxin response factor 1
4ldx_A1e-73126232296Auxin response factor 1
4ldx_B1e-73126232296Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513812.10.0PREDICTED: uncharacterized protein LOC107830695 isoform X2
TrEMBLA0A1S4DKA80.0A0A1S4DKA8_TOBAC; Auxin response factor
STRINGXP_009773406.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.13e-79auxin response factor 11