PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513897.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NF-YA
Protein Properties Length: 277aa    MW: 30736 Da    PI: 9.3301
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513897.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA100.31.8e-31120176158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep++VNaKQy++Il+RRq Rak+e ekk  +k+rkpylheSRh+hA+rR+Rg+gGrF
  XP_016513897.1 120 EEPVFVNAKQYHGILRRRQIRAKAELEKKA-IKARKPYLHESRHQHAMRRARGTGGRF 176
                     69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.1E-36118179IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.628119179IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.0E-27121176IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.5E-24122144IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860124144IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.5E-24153176IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MQPWWQGYGD NTMSLVSENT VAQGNAEGGN EEKETNAQAT ESGSKGNNVQ YKQHLKHITS  60
TTVTIMGEQQ KELTGHSAML TSYPYPDLQY GGMMTYGAPV HPHLFEIHHA RMPLPLDMEE  120
EPVFVNAKQY HGILRRRQIR AKAELEKKAI KARKPYLHES RHQHAMRRAR GTGGRFLNTK  180
KLNDMDCITD EAKKYGATIP THSGNSSGSG SSDQREKEGS TVQDMHKGQR SFSTGNGHGS  240
SVYFSQYAGN EQQNGHYSHG SWSLLVSQAS RGAASNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-20120180262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-106HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626581.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X2
RefseqXP_009626582.10.0PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X3
RefseqXP_016513896.10.0PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
TrEMBLA0A1S4DKH40.0A0A1S4DKH4_TOBAC; nuclear transcription factor Y subunit A-1-like isoform X1
STRINGXP_009626580.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.11e-29nuclear factor Y, subunit A7