PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016513938.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Trihelix

Protein Properties

Length: 456aa MW: 52385.1 Da PI: 6.4326

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016513938.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.5	8.8e-24	84	191	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ ++ XP_016513938.1 84 KWTDNMVRLLIMVVYYIGDEVGSELnnnnndttngkkkgggsvgvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtAC 178 7************777777754223456778888999999**********************************************559 PP trihelix 74 essstcpyfdqle 86 +++++ +++ ++ XP_016513938.1 179 RVVENQNLLETMD 191 *****999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.8E-21	82	217	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 456 aa Download sequence Send to blast
MDSSSIYSNI GPGMLGLEMS LHHQVPQQNP HHMQQQQQQQ QSLRQGLPFG NKAKNQSLTF 60 SDEDDNNSVE DGKRSKTCPW QRMKWTDNMV RLLIMVVYYI GDEVGSELNN NNNDTTNGKK 120 KGGGSVGVLQ KKGKWKSVSR AMMERGFYVS PQQCEDKFND LNKRYKRVND ILGKGTACRV 180 VENQNLLETM DHLTQKMKEE VKKLLNSKHL FFREMCAYHN SCGHNNTSTG GGSDIGNVQL 240 STEMAVEANS QAQKRCLHSS ENARIGVHLE EGPKMAKGKS VDDDQEDDEE DEDEDEEEDD 300 DDEVSGARGG HDHHHNHSHE DDDDMDERSR KSQRKSGSLS PMVQQLSTEL ANVIQDGGRS 360 SVEKRQWLKT RMVQLKEQHV SYLCQAFELQ KQRLKWEKFT SKKEREMEKE KLINERKKME 420 NERMVLLLRQ KELELLDFHQ HQNHNNRNSD PSSVTG

Sequence ? help Back to Top

Protein Sequence Length: 456 aa Download sequence Send to blast

MDSSSIYSNI GPGMLGLEMS LHHQVPQQNP HHMQQQQQQQ QSLRQGLPFG NKAKNQSLTF  60
SDEDDNNSVE DGKRSKTCPW QRMKWTDNMV RLLIMVVYYI GDEVGSELNN NNNDTTNGKK  120
KGGGSVGVLQ KKGKWKSVSR AMMERGFYVS PQQCEDKFND LNKRYKRVND ILGKGTACRV  180
VENQNLLETM DHLTQKMKEE VKKLLNSKHL FFREMCAYHN SCGHNNTSTG GGSDIGNVQL  240
STEMAVEANS QAQKRCLHSS ENARIGVHLE EGPKMAKGKS VDDDQEDDEE DEDEDEEEDD  300
DDEVSGARGG HDHHHNHSHE DDDDMDERSR KSQRKSGSLS PMVQQLSTEL ANVIQDGGRS  360
SVEKRQWLKT RMVQLKEQHV SYLCQAFELQ KQRLKWEKFT SKKEREMEKE KLINERKKME  420
NERMVLLLRQ KELELLDFHQ HQNHNNRNSD PSSVTG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975448	1e-110	HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBank	HG975521	1e-110	HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016513938.1	0.0	PREDICTED: uncharacterized protein DDB_G0284311-like isoform X1
TrEMBL	A0A1S4DKM5	0.0	A0A1S4DKM5_TOBAC; uncharacterized protein DDB_G0284311-like isoform X1
STRING	XP_009788508.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6710	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	4e-73	sequence-specific DNA binding transcription factors