PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016513939.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 455aa    MW: 52154.8 Da    PI: 6.5137
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016513939.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.58.8e-2484191186
        trihelix   1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.ts 73 
                     +Wt+++v++Li ++ +++++++++                      +kk++W++vs++m+ergf +sp+qC++k+++lnkryk+++++ +k+ ++
  XP_016513939.1  84 KWTDNMVRLLIMVVYYIGDEVGSELnnnnndttngkkkgggsvgvlQKKGKWKSVSRAMMERGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtAC 178
                     7**************777777754223456778888999999**************************************************559 PP

        trihelix  74 essstcpyfdqle 86 
                     +++++  +++ ++
  XP_016513939.1 179 RVVENQNLLETMD 191
                     *******999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.7E-2182217No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDSSSIYSNI GPGMLGLEMS LHHQVPQQNP HHMQQQQQQQ QSLRQGLPFG NKAKNQSLTF  60
SDEDDNNSVE DGKRSKTCPW QRMKWTDNMV RLLIMVVYYI GDEVGSELNN NNNDTTNGKK  120
KGGGSVGVLQ KKGKWKSVSR AMMERGFYVS PQQCEDKFND LNKRYKRVND ILGKGTACRV  180
VENQNLLETM DHLTQKMKEE VKKLLNSKHL FFREMCAYHN SCGHNTSTGG SGGSGNVQLS  240
TEVAVEANSQ AQKRCLHSSE NARIGVHLEE GPKMAKGKSV DDDQEDDEED EDEDEEEDDD  300
DEVSGARGGH DHHHNHSHED DDDMDERSRK SQRKSGSLSP MVQQLSTELA NVIQDGGRSS  360
VEKRQWLKTR MVQLKEQHVS YLCQAFELQK QRLKWEKFTS KKEREMEKEK LINERKKMEN  420
ERMVLLLRQK ELELLDFHQH QNHNNRNSDP SSVTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-110HG975448.1 Solanum pennellii chromosome ch09, complete genome.
GenBankHG9755211e-110HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016513939.10.0PREDICTED: FERM domain-containing protein C-like isoform X2
TrEMBLA0A1S4DKY40.0A0A1S4DKY4_TOBAC; FERM domain-containing protein C-like isoform X2
STRINGXP_009619384.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.11e-72sequence-specific DNA binding transcription factors