PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016514053.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 554aa    MW: 60222.6 Da    PI: 8.4352
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016514053.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.71.6e-16258307255
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r +h++ E+rRR++iN++f+ Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  XP_016514053.1 258 RSKHSATEQRRRSKINDRFQMLRGIIPNS----DQKRDKASFLLEVIEYIHFLQ 307
                     889*************************9....9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-23253324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-18254324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.272256306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.92E-15258311No hitNo description
PfamPF000103.8E-14258307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-13262312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MELPQPRPFG TEGRKTTHDF LSLYSPVQQD PTPPQAGGFL KTHDFLQPLE QAEKALRKEE  60
AKVEVVAVEK PPAPVASPSV EHILPGGIGT YSISYLHQRI PKPEASLFAV AQATSTDRND  120
ENSNCSSYTG GSGFTLWDES AVKGKTGKEN SGGDRHALRG LNTGGGQPTT SLEWQSQSSS  180
NHKHNTTAIS SLSSARQSSP LKTQSFVHMI TSAKNAQDDD DDDDEDFVIK KEPQSHPRGN  240
LSVKVDGEGN DKKPNTPRSK HSATEQRRRS KINDRFQMLR GIIPNSDQKR DKASFLLEVI  300
EYIHFLQEKV HKYEESYQGW ENEPLKLPLS KCHRTTQGAS NHPQGTINAS GAAPTYAVKF  360
DENIMGISST NPFNAQKVEP NISTTSLKES SQRPGLTNKA TTPSMSPNTF PFCGASTAAL  420
YSSKLTADTA KLESKSHPQF SVSRSHMTDY AIPNANSKGQ DLSIESGTIS ISSAYSQGLL  480
NTLTLALQNS GVDLSQANIS VQIDLGKRAN GRLHSSASTV KGDDVSTSNQ PIPKSISTST  540
REESDRAFKR LKTS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0137860.0BT013786.1 Lycopersicon esculentum clone 132679F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009757586.10.0PREDICTED: transcription factor BIM1 isoform X3
RefseqXP_016514053.10.0PREDICTED: transcription factor BIM1-like isoform X3
TrEMBLA0A1S4DKY90.0A0A1S4DKY9_TOBAC; transcription factor BIM1-like isoform X3
TrEMBLA0A1U7UXW30.0A0A1U7UXW3_NICSY; transcription factor BIM1 isoform X3
STRINGXP_009757584.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-106bHLH family protein