PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016514208.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 130aa MW: 14905.7 Da PI: 6.6699

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016514208.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.6	3.8e-12	2	27	31	56
HHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 31 eeLAkklgLterqVkvWFqNrRakek 56 +LA++lgL+ rqV +W+qN+Ra++k XP_016514208.1 2 SQLAQELGLPPRQVAIWYQNKRARWK 27 69***********************9 PP
2	HD-ZIP_I/II	79.2	6.6e-26	1	65	29	93
HD-ZIP_I/II 29 KvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 K++la+eLgl prqva+W+qn+RAR+k++ lE+dy+aL++++d+ +++nerL+ eve+L+eel++ XP_016514208.1 1 KSQLAQELGLPPRQVAIWYQNKRARWKSQSLEVDYKALQQRLDNAMSDNERLKLEVERLKEELNK 65 89************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.681	1	29	IPR001356	Homeobox domain
CDD	cd00086	7.99E-9	1	30	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.9E-12	2	36	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-9	2	27	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.85E-10	2	38	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	4	27	IPR017970	Homeobox, conserved site
Gene3D	G3DSA:1.20.5.170	9.5E-4	37	73	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 130 aa Download sequence Send to blast
KSQLAQELGL PPRQVAIWYQ NKRARWKSQS LEVDYKALQQ RLDNAMSDNE RLKLEVERLK 60 EELNKAQEML LAFNTTTNNY SSISSSCDEV GSSCLQLHTQ SKHHLDKELY ACLIGDEGHF 120 GHNFFASSMS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	4e-96	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009800499.1	3e-93	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
Refseq	XP_016514208.1	2e-93	PREDICTED: homeobox-leucine zipper protein ATHB-52-like, partial
TrEMBL	A0A1S4DLE0	4e-92	A0A1S4DLE0_TOBAC; homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A1U7YMN8	7e-92	A0A1U7YMN8_NICSY; homeobox-leucine zipper protein ATHB-52-like
STRING	XP_009800499.1	1e-92	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2715	24	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	2e-16	homeobox 7