PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016514418.1
Common NameNtHSF2
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HSF
Protein Properties Length: 388aa    MW: 44229 Da    PI: 4.9945
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016514418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.51.3e-301869102
                     HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX.XXXXXXXXXXXXXXXXX CS
    HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks.Fkkgkkellekikrkks 102
                     +++d++ + ++sws++++sfvv+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgF+kv+ e+         weF+++  F +g+ +ll++i+r+k 
  XP_016514418.1   1 MVDDPSSDAIVSWSSSNKSFVVWNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFRKVDPEK---------WEFANEDnFFRGQPHLLKNIHRRKP 86 
                     899*******************************************************999.........*****988**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004472.2E-27184IPR000232Heat shock factor (HSF)-type, DNA-binding
SMARTSM004155.8E-48184IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.2E-33184IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-29184IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.0E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MVDDPSSDAI VSWSSSNKSF VVWNPPDFAR DLLPRYFKHN NFSSFIRQLN TYGFRKVDPE  60
KWEFANEDNF FRGQPHLLKN IHRRKPVHSH SAQNLHGLSS PLTESERQGY KEDIQKLKHE  120
NESLHLDLQR HQQDRQGLEL QMQVFTERVQ HVEHRQKTML SALARMLDKP VTDLSRMPQL  180
QVNDRKRRLP GNSCLYNETD LEDTRAISSR ALTWENMNPS SLLTINAELL DQLDSSLTFW  240
ENVLQDVDQA WIQQNCSLEL DESTSCADSP AISYTQLNVD VGPKASDIDM NSEPNANTNP  300
EVAAPEDQAA VAGTTTNVPT GVNDIFWEQF LTENPGSVDA SEVQSERKDI GNKKNESKPV  360
DSGKFWWNMK SVNSLAEQLG HLTPAEKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2018436129Heat shock factor protein 1
5d5v_B2e-2018436129Heat shock factor protein 1
5d5v_D2e-2018436129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1183188DRKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0144840.0AB014484.1 Nicotiana tabacum NtHSF2 mRNA for heat shock factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016514418.10.0PREDICTED: heat stress transcription factor A-4a-like isoform X2
TrEMBLA0A1S4DLX60.0A0A1S4DLX6_TOBAC; heat stress transcription factor A-4a-like isoform X2
TrEMBLA0A1S4DMM30.0A0A1S4DMM3_TOBAC; heat stress transcription factor A-4c-like isoform X1
STRINGXP_009592186.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-108heat shock transcription factor A4A