PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016514484.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 235aa    MW: 25651.7 Da    PI: 7.1159
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016514484.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF481.6e-151258248
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                    +i  ++ r vtfskRr+g++KKA EL  +++ +va ++fs+tg+ y+
  XP_016514484.1 12 KITKETSRMVTFSKRRKGLFKKAGELESMTGSRVAAVVFSPTGRPYT 58
                    688999*************************************9776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-20362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.521363IPR002100Transcription factor, MADS-box
CDDcd001201.30E-23458No hitNo description
SuperFamilySSF554551.96E-19487IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-13525IPR002100Transcription factor, MADS-box
PfamPF003191.1E-201258IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-132540IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-134061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGTGKKKIQI EKITKETSRM VTFSKRRKGL FKKAGELESM TGSRVAAVVF SPTGRPYTCG  60
NVSYAIERHF SSFSEPSSSG LNSHHSNSDD VSASSSGSRS SPSPRNSLRD WLEDIDVEEC  120
QNLNQLLMLK EQLEGTREKL VSKDSECFQA LFMRVRGHSS SGAELRFNTV PQAGLEGVPI  180
VDLVDVSSHV ALNANLGVDP EGSICREVRS DGRGTHGRED GGVSLQLIFE MLQAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016514484.11e-173PREDICTED: MADS-box transcription factor 23-like
TrEMBLA0A1S4DMV21e-172A0A1S4DMV2_TOBAC; MADS-box transcription factor 23-like
STRINGXP_009796162.18e-92(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23371757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-11AGAMOUS-like 29