PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016514564.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 649aa    MW: 71504 Da    PI: 7.0792
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016514564.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.93.3e-2964147186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++qe+laL+++r+em+  +r+++lk+plWeevs+k+++ g++rs+k+Ckek+en+ k+++++k+g+ ++   + +t+++fdql 
  XP_016514564.1  64 RWPRQETLALLRIRSEMDVVFRDSSLKGPLWEEVSRKLADLGYHRSAKKCKEKFENVYKYHRRTKDGRASK--ADGKTYRFFDQLA 147
                     8********************************************************************96..66678******96 PP
2trihelix104.11e-32458543187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k+e+ aLi++r++++ +++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea
  XP_016514564.1 458 RWPKEEIEALIRLRTSLDLKYQDNGPKGPLWEEISAGMRKLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 543
                     8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.1257121IPR017877Myb-like domain
SMARTSM007170.002361123IPR001005SANT/Myb domain
CDDcd122034.52E-2563128No hitNo description
PfamPF138372.3E-1863148No hitNo description
SMARTSM007172.6E-5455517IPR001005SANT/Myb domain
CDDcd122032.38E-29457522No hitNo description
PROSITE profilePS500907.689457515IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.0E-4457514IPR009057Homeodomain-like
PfamPF138371.2E-22457544No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MLGVSSGLMS TTSGGGGTAN ISAPPPQEAP ESGGSSEGGG GGGGDVAAAG GFSEEGERNS  60
GGNRWPRQET LALLRIRSEM DVVFRDSSLK GPLWEEVSRK LADLGYHRSA KKCKEKFENV  120
YKYHRRTKDG RASKADGKTY RFFDQLAAFE NSPSHNSLPP PPLAATPLTM AMPMRTNSST  180
NLPIPMSQTT APPTQNTFTV SQNNVVTAAA APTVNHPLNV PSLPLSQPPP LPSTQPIITT  240
VNQINRPQGN TSSLLSNSTS SSSTSSDEDI QKQHGKKRKW KDFFERLTKD VIEKQEELQK  300
KFLETLEKRE RERMVREETW RLQEMTRMNR EHDLLVQERS MAAAKDATII AFLQKITEQK  360
NTPIPNITND SLAQIQFQLS EKSPSVPPHS QPQKQTQQLA APATAPVPAP APTIAVSIPM  420
TIHAQVQTQA PSLPVVKTFE APKPDNGGEN FSPASSSRWP KEEIEALIRL RTSLDLKYQD  480
NGPKGPLWEE ISAGMRKLGY NRNAKRCKEK WENINKYFKK VKESNKKRPE DSKTCPYFHQ  540
LEALYKEKAK NEVVPNTGTG FGLKPENNNT MVPIMAEPEQ QWPFPSNQPQ QQGMSNIIQD  600
HDNESDSMEE DDYDDDEDEG NAYEIVTNKQ PSSMAAATAT AAAAATTAV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270278QKQHGKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016514564.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391171e-138TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A1S4DN330.0A0A1S4DN33_TOBAC; trihelix transcription factor GT-2-like
STRINGXP_009594163.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.28e-50Trihelix family protein