PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515153.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 285aa    MW: 30237 Da    PI: 9.1341
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515153.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH261.5e-0897122227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     k +lC+ +     C++Gd+C+FaH++
  XP_016515153.1  97 KSKLCNKYNTAEGCNFGDKCHFAHSE 122
                     678*********************95 PP
2zf-CCCH32.11.9e-10256280126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+ C++f++ G C +G++C+FaHg
  XP_016515153.1 256 FKTKMCSNFSK-GSCTFGEKCHFAHG 280
                     69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.313462IPR000571Zinc finger, CCCH-type
SMARTSM003561.33461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-63562IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-73659IPR000571Zinc finger, CCCH-type
PfamPF146080.884259No hitNo description
PROSITE profilePS5010312.9995123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-795125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-1195125IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-697122IPR000571Zinc finger, CCCH-type
SMARTSM003560.008397122IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.13E-15156235IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.8E-17163234IPR004088K Homology domain, type 1
SMARTSM003221.6E-12163233IPR004087K Homology domain
PROSITE profilePS5008414.068164228IPR004088K Homology domain, type 1
PfamPF000132.8E-11166230IPR004088K Homology domain, type 1
CDDcd001057.31E-14166228No hitNo description
PROSITE profilePS5010316.22255282IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4255281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-8256284IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-7256280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-14256285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MEFGRKRIVD GAFAGNGGMK KSRNESESFT SGVGSKSKPC MKFYSTSGCS YGEGCHFLHY  60
VPGYSAMSQI SNMGLNPAVP VGRNHASFSD GPASTMKSKL CNKYNTAEGC NFGDKCHFAH  120
SEMEIGKPVA LAYDDFQAAG PPSRFPGYHK PSQPSPVATN FGASATTTIS IDAALAGTII  180
GKNGVNSKQI CRLTGVKLSI KDHETDSNRR NIELQGTFDQ INQASAMVRE IISNVGTPTG  240
GPKNTGPFTR GPAGPFKTKM CSNFSKGSCT FGEKCHFAHG ASELQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515153.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R04e-94C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1S4DP050.0A0A1S4DP05_TOBAC; zinc finger CCCH domain-containing protein 14-like
STRINGXP_009622408.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-60C3H family protein