PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515338.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family NAC
Protein Properties Length: 375aa    MW: 43267.6 Da    PI: 5.0205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515338.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM177.34.1e-55191481129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPtdeelv +yL+kk++++k++l +vi+++d+y++ePwdL+ k    ++e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v
  XP_016515338.1  19 VPPGFRFHPTDEELVGYYLRKKIASQKIDL-DVIRDIDLYRIEPWDLRdKcrIGYEEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKAV 112
                     69****************************.9***************843432233667************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     ++ k +l+g++ktLvfykgrap+g+ktdW+mheyrle
  XP_016515338.1 113 YD-KLKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 148
                     **.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-6011168IPR003441NAC domain
PROSITE profilePS5100559.26119168IPR003441NAC domain
PfamPF023651.1E-2820147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MQTKINTVVV NMDTNESCVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE  60
PWDLRDKCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK AVYDKLKLIG  120
MRKTLVFYKG RAPNGQKTDW IMHEYRLESE DNGPPQEEGW VVCRAFKKKI TGQTKTNMGE  180
GWESNYFYEE ATTAVSLVVD PLEYITRQPL PPNFMAQNLL CKQEMELAEN NNLNFPYNSD  240
QFVQLPQLQS PSLPLIKRPI SSMSLVSENS NQEDDEQTIN KRCSTINSST SKNVTADWRA  300
LDKFVASQLS HDNHEQERTY ETNHGLLSSF EEEAHNYSDL GMLLLLSDRE EGPKLNEILS  360
SSSDGCDIGV CIFDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-501917317170NO APICAL MERISTEM PROTEIN
1ut4_B6e-501917317170NO APICAL MERISTEM PROTEIN
1ut7_A6e-501917317170NO APICAL MERISTEM PROTEIN
1ut7_B6e-501917317170NO APICAL MERISTEM PROTEIN
3swm_A6e-501917320173NAC domain-containing protein 19
3swm_B6e-501917320173NAC domain-containing protein 19
3swm_C6e-501917320173NAC domain-containing protein 19
3swm_D6e-501917320173NAC domain-containing protein 19
3swp_A6e-501917320173NAC domain-containing protein 19
3swp_B6e-501917320173NAC domain-containing protein 19
3swp_C6e-501917320173NAC domain-containing protein 19
3swp_D6e-501917320173NAC domain-containing protein 19
4dul_A6e-501917317170NAC domain-containing protein 19
4dul_B6e-501917317170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515338.10.0PREDICTED: NAC domain-containing protein 37-like
RefseqXP_018629388.10.0PREDICTED: NAC domain-containing protein 37-like isoform X1
SwissprotQ9SL411e-154NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A1S4DPI70.0A0A1S4DPI7_TOBAC; NAC domain-containing protein 37-like
STRINGXP_009611974.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-145vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]