PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515370.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 320aa    MW: 36734.2 Da    PI: 8.909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515370.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83.1e-16222268455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  XP_016515370.1 222 VHNQSERRRRDRINEKMKALQKLVPNA-----SKTDKASMLDEVIKYLKQLQ 268
                     6*************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.6E-17218284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.739218267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-18221288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-14222268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-14223272No hitNo description
SMARTSM003531.0E-16224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSHNWNHRQQ RQEQVVEEQE ENRYPHVHNQ QPQNHLVPMS KCEVAELTWE NGQLAMLRLG  60
NNLPNEQTKH TWERASDTLE SVVHQATNCQ KQNLDLKGIS DKNKANINTE NIVKQETIGG  120
VAKKRMRSDS DPQLYGTSGR LVGEFHKNIV DQHAEPSASA SARDTVMTWP NYHSLDESSR  180
SFKSKATFNE DSACHIAGLE NKETERETKA HNTLGRSRTA AVHNQSERRR RDRINEKMKA  240
LQKLVPNASK TDKASMLDEV IKYLKQLQAQ IQLISNARNM ESQMMMPPLS LGLMQLPHIQ  300
MPLLARMWHG CQSWHDNRNA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226231ERRRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515370.10.0PREDICTED: transcription factor PIF7-like
TrEMBLA0A1S4DPM60.0A0A1S4DPM6_TOBAC; transcription factor PIF7-like
STRINGXP_009595347.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA54371732
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.18e-39bHLH family protein