PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016516169.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 106aa    MW: 12503.7 Da    PI: 10.3052
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016516169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93e-15853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
   XP_016516169.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding37.65.2e-1260103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
   XP_016516169.1  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
SuperFamilySSF466893.14E-12555IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-19556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139211.0E-141070No hitNo description
CDDcd001673.40E-111053No hitNo description
SuperFamilySSF466894.03E-2139104IPR009057Homeodomain-like
CDDcd116591.73E-3155106No hitNo description
Gene3DG3DSA:1.10.10.608.5E-1657104IPR009057Homeodomain-like
PROSITE profilePS5129416.65158106IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L3e-6121063107Cell division cycle 5-like protein
5xjc_L3e-6121063107Cell division cycle 5-like protein
5yzg_L3e-6121063107Cell division cycle 5-like protein
5z56_L3e-6121063107Cell division cycle 5-like protein
5z57_L3e-6121063107Cell division cycle 5-like protein
5z58_L3e-6121063107Cell division cycle 5-like protein
6ff4_L3e-6121063107Cell division cycle 5-like protein
6ff7_L3e-6121063107Cell division cycle 5-like protein
6icz_L3e-6121063107Cell division cycle 5-like protein
6id0_L3e-6121063107Cell division cycle 5-like protein
6id1_L3e-6121063107Cell division cycle 5-like protein
6qdv_O3e-6121063107Cell division cycle 5-like protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0138501e-122BT013850.1 Lycopersicon esculentum clone 132810F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016516169.11e-72PREDICTED: cell division cycle 5-like protein, partial
RefseqXP_019232628.16e-72PREDICTED: cell division cycle 5-like protein
SwissprotP929481e-69CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A067DSG92e-70A0A067DSG9_CITSI; Uncharacterized protein
TrEMBLA0A1D6N2M21e-70A0A1D6N2M2_MAIZE; CDC5 protein
TrEMBLA0A1S4DSP62e-71A0A1S4DSP6_TOBAC; cell division cycle 5-like protein
TrEMBLC1ML822e-70C1ML82_MICPC; Predicted protein (Fragment)
STRINGevm.model.supercontig_306.12e-70(Carica papaya)
STRINGXP_003056512.13e-71(Micromonas pusilla)
STRINGLus100434515e-72(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1795734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.15e-72cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]