PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016646850.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 27849.9 Da    PI: 8.6067
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016646850.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF76.91.5e-241962851
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     rqvtfskRr gi+KKAeELSvLC+ evav+ifs tgkl++yss
  XP_016646850.1 19 ARQVTFSKRRRGIFKKAEELSVLCESEVAVVIFSATGKLFDYSS 62
                    69****************************************96 PP
2K-box36.12.7e-1379164789
           K-box   7 ksleeakaeslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqe 89 
                     ++++++ + +lq e+++  + +++L    r++R++ GedLe+L++ eLq+Leq ++ sl ++ ++K   l+e  ++l++++ +l++
  XP_016646850.1  79 VEKSDEPSVELQLEIENQIRLNKELAeksRQLRQMRGEDLEELNIDELQKLEQLVDASLGRVIETKGAELVEANNQLRQRMVMLSR 164
                     44666667778888887777777776666999************************************************998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-31463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.296464IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-27677IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-23626IPR002100Transcription factor, MADS-box
PfamPF003191.7E-211960IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-232641IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-234162IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.77289177IPR002487Transcription factor, K-box
PfamPF014862.9E-896164IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MVKTMRKKIK IKKIDYLPAR QVTFSKRRRG IFKKAEELSV LCESEVAVVI FSATGKLFDY  60
SSSSTKNVVE RYKAHTNGVE KSDEPSVELQ LEIENQIRLN KELAEKSRQL RQMRGEDLEE  120
LNIDELQKLE QLVDASLGRV IETKGAELVE ANNQLRQRMV MLSRGNIGPG LTEPERFINN  180
IGDGGEEGMS SESATNATIS SCSSGLSLSL EDDCSDVTLA LKLGKLQLRN PNTVLLKTYG  240
RKCIPRSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A5e-16675271Myocyte-specific enhancer factor 2A
3mu6_B5e-16675271Myocyte-specific enhancer factor 2A
3mu6_C5e-16675271Myocyte-specific enhancer factor 2A
3mu6_D5e-16675271Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016646850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8632540.0DQ863254.1 Prunus persica dam2 alpha mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016646850.10.0PREDICTED: MADS-box protein JOINTLESS-like isoform X2
SwissprotQ9FUY69e-61JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLG1UE201e-138G1UE20_PRUMU; Dormancy associated MADS-box 2
STRINGXP_008219270.11e-139(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-51MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]