PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016646936.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family M-type_MADS
Protein Properties Length: 207aa    MW: 23390 Da    PI: 9.005
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016646936.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF33.65e-114789950
                    HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS
          SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50
                    r vtf kR++ ++ K  E+ +LC++ ++ +++  s+ k+  ++
  XP_016646936.1 47 RRVTFKKRKASLFRKLTEITTLCGIIACAVVYDpSDSKMDAWP 89
                    89**********************9998777751567888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.3E-41190IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-1445123IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.0634781IPR002100Transcription factor, MADS-box
PfamPF003195.4E-114782IPR002100Transcription factor, MADS-box
CDDcd002669.14E-1947115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MLGRDAIGGL LGREAIDLGT VSSMSGNFYS YEIKMLGTFL YSRAHVRRVT FKKRKASLFR  60
KLTEITTLCG IIACAVVYDP SDSKMDAWPS PQEAFYVLEN FKKLPEQRRG QFMMDQKAFL  120
KKNISRLNGQ LERARFKYQA LDAELLLIEY LEGKNLRDSS RLGSLLALED QLAKKISFIT  180
NRIAFVEGLG PNEVDAEIIS DEMGDQG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016646936.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016646936.11e-151PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLM5XZI51e-105M5XZI5_PRUPE; MADS-box protein 29
STRINGXP_008219022.11e-120(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144641115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.22e-22AGAMOUS-like 87