PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016646952.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 156aa    MW: 17656.1 Da    PI: 10.6309
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016646952.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.34.9e-17601331485
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkld 85 
                     + +++p +fa+++g++ ++   + l+d+sgrsW + ++ + ++ r    +  +kGW +F +an+Lk gD+++F l+
  XP_016646952.1  60 AYMTFPANFARSNGIVDTS--RIFLKDPSGRSWPLIISKWESKTRgsyrIATRKGWYKFYEANKLKHGDVCIFNLK 133
                     6799*********999766..7***************8855554445546777********************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.0E-1839152IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-1840133IPR015300DNA-binding pseudobarrel domain
CDDcd100171.27E-1645138No hitNo description
SMARTSM010191.8E-946155IPR003340B3 DNA binding domain
PROSITE profilePS5086312.7647150IPR003340B3 DNA binding domain
PfamPF023621.6E-1460133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MVFNVVAYES LGSEKEYELQ SDKHQHDYKG KRTLKGTASS SSRTLFSTMM SKTHGDPLRA  60
YMTFPANFAR SNGIVDTSRI FLKDPSGRSW PLIISKWESK TRGSYRIATR KGWYKFYEAN  120
KLKHGDVCIF NLKPVSSKSG SKSTRVLEVQ ITRGGS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016646952.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016646952.11e-113PREDICTED: B3 domain-containing protein REM14-like
TrEMBLA0A251RGD51e-102A0A251RGD5_PRUPE; Uncharacterized protein
STRINGXP_008220723.11e-53(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.11e-10B3 family protein