PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016647029.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 343aa    MW: 38168 Da    PI: 6.9823
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016647029.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-16156201147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
   XP_016647029.1 156 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 201
                      899*****************************.***********996 PP
2Myb_DNA-binding54.72.3e-17208251146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+++l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
   XP_016647029.1 208 RRAFTEEEEDRLMQAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHV 251
                      678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.302151202IPR017930Myb domain
SuperFamilySSF466892.21E-28155249IPR009057Homeodomain-like
SMARTSM007172.9E-14155204IPR001005SANT/Myb domain
PfamPF002496.5E-16156201IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-26157209IPR009057Homeodomain-like
CDDcd001673.34E-13159200No hitNo description
PROSITE profilePS5129426.783203257IPR017930Myb domain
SMARTSM007175.8E-14207255IPR001005SANT/Myb domain
PfamPF002492.8E-14208250IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.8E-21210256IPR009057Homeodomain-like
CDDcd001673.20E-11210250No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010199Biological Processorgan boundary specification between lateral organs and the meristem
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MANNGAIYVT ESPNAFSCFS SAPSFSSSSP SCSMGMVYAD MGSLSLSSNY GLVSSVSSQE  60
SSYISKLSEV ENGRGFWGFP PMGNCNNRSS EDYHHNTDIG DGKGSDSSSD HESGENNQTC  120
MNDQKANLIN HEKYPNENVV IGGKETESGQ SKHCARGHWR PAEDSKLKEL VALYGPQNWN  180
LIAEKLEGRS GKSCRLRWFN QLDPRINRRA FTEEEEDRLM QAHRVYGNKW AMIARLFPGR  240
TDNAVKNHWH VIMARKYREQ SSAYRRRKLS QTVYRRMEED PSFNVSRSTE PPSYCTLNLP  300
PNGGLSNSTL SPFPYGTSYN GVVGCGVDYY GSNGSPNMTS AEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-341562567107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00222DAPTransfer from AT1G69560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016647029.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016647029.10.0PREDICTED: myb-like protein AA, partial
TrEMBLA0A251R4770.0A0A251R477_PRUPE; Uncharacterized protein
TrEMBLM5XP830.0M5XP83_PRUPE; Uncharacterized protein
STRINGEMJ277290.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-76myb domain protein 105