PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016647031.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family AP2
Protein Properties Length: 425aa    MW: 47847.1 Da    PI: 9.3012
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016647031.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.88.2e-1679138155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  XP_016647031.1  79 SRFRGVSRHRWTGRYEAHLWDkGSWNPtqrKKgKQVYLGAYDEEESAARAYDLAALKYWG 138
                     789******************988855556447*************************98 PP
2AP254.62.7e-17181232155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++gt eeAa a++ a+ +++g
  XP_016647031.1 181 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYGTQEEAAHAYDIAAIEYRG 232
                     89****99**********99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.33E-1979147No hitNo description
SuperFamilySSF541713.53E-1679147IPR016177DNA-binding domain
PfamPF008474.5E-1279138IPR001471AP2/ERF domain
PROSITE profilePS5103219.57280146IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-1580146IPR001471AP2/ERF domain
SMARTSM003802.1E-2480152IPR001471AP2/ERF domain
PRINTSPR003673.2E-58192IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-17181242IPR016177DNA-binding domain
PfamPF008477.4E-13181232IPR001471AP2/ERF domain
CDDcd000184.78E-24181242No hitNo description
PROSITE profilePS5103218.465182240IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17182241IPR001471AP2/ERF domain
SMARTSM003801.2E-24182246IPR001471AP2/ERF domain
PRINTSPR003673.2E-5222242IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MDHLTSVKSE LSQGRRPLCL IEVDALVNKC VKRRRRDSSA VVAPAGCSDQ QQGDQGPQQQ  60
AQQAGQSTVA TTTTVKRSSR FRGVSRHRWT GRYEAHLWDK GSWNPTQRKK GKQVYLGAYD  120
EEESAARAYD LAALKYWGTS TFTNFPVPDY ENEIEIMNTL SKEEYLASLR RRSSGFSRGV  180
SKYRGVARHH HNGRWEARIG RVFGNKYLYL GTYGTQEEAA HAYDIAAIEY RGINAVTNFD  240
LSTYIRWLRP GANSLGSQEP KLNTESLLMP ASSNSIPSKE GKQMYXNSFQ VDDVDTSRNR  300
NNFQRQQKQP MPISPCTKSS SSPTALGLLL QSSVFKELVE KNLNGDNEES EKNDIRNLLP  360
VQTNSDNLKR ILYNGMHNYP FTCPSNTSVL PALESQEESI LPLCNSRGQS IWNGAINMFS  420
SPDFN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112PTQRKKGKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016647031.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016647031.10.0PREDICTED: LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor At1g79700
TrEMBLA0A251R3Z90.0A0A251R3Z9_PRUPE; Uncharacterized protein
STRINGXP_008221746.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21983283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-78AP2 family protein