PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016647439.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family E2F/DP
Protein Properties Length: 431aa    MW: 48305.1 Da    PI: 6.38
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016647439.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP856e-27158222170
         E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwk 70 
                     r+++sL+llt+kf++l++++++++++ln+ a+ L   +v  ++RRiYDi+NVLe++nliek++kn+irwk
  XP_016647439.1 158 RYDSSLGLLTKKFVSLIQEAKDRTLDLNKTAEVL---EV--QKRRIYDITNVLEGINLIEKTSKNHIRWK 222
                     6899******************************...99..****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-27157222IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.6E-33158223IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467854.22E-17158221IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.7E-24160222IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146604.67E-33234342No hitNo description
SuperFamilySSF1440745.49E-23235341No hitNo description
PfamPF164214.0E-23240339IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEMEDPNRLL RPSQFEFQLL HSHSQTQNHQ NHPSYLLPSL LSSQHLLPHS FPAFAPSIDS  60
GHHRLSDSAF ASHADAHSAF AKLALRPKKE IDDVAQIGGH EAAAGPSKVL HDPSLSIPQS  120
CTGRKHNPKS KVPKHTKAGT QRSTADSHNG LNPAIGCRYD SSLGLLTKKF VSLIQEAKDR  180
TLDLNKTAEV LEVQKRRIYD ITNVLEGINL IEKTSKNHIR WKCYEGSTPG ELDDQVSRIQ  240
DEVESLYAEE CRLDDAIREK LELLRALEED EKNKKFLFLT EEDILSLCCF QNQTLIAIKA  300
PQASYIEVID PDDEDTCFPQ KQFRMIVRST IGPIHLYLLS KYQGQRENIA VKQAKSVGSS  360
SWNSSDYSRV EDGGLSSYHQ GNKKDSSEIL SLPGSEASSG IQKIIPSHVN ANDDYWFRSE  420
PEVSLTDLWA N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A9e-23153222272PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016647439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016647439.10.0PREDICTED: transcription factor E2FC
TrEMBLA0A314ZVN90.0A0A314ZVN9_PRUYE; Transcription factor E2FC
STRINGXP_008221406.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118852529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.21e-86E2F/DP family protein