PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016647596.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

CAMTA

Protein Properties

Length: 874aa MW: 98934.1 Da PI: 7.6789

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016647596.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.1	4.9e-51	3	118	3	118
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrr 97 + k+rwl+++ei+aiL n++ +++ ++ + p+sg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+e+ ptf rr XP_016647596.1 3 EAKSRWLRPNEIHAILYNHKYFTIYVKPVNLPQSGTIVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVRR 97 459****************************************************************************************** PP CG-1 98 cywlLeeelekivlvhylevk 118 cywlL+++le+ivlvhy+e++ XP_016647596.1 98 CYWLLDKSLEHIVLVHYRETQ 118 ****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.892	1	123	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.4E-75	1	118	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.4E-45	3	116	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.26E-13	328	415	IPR014756	Immunoglobulin E-set
CDD	cd00204	4.77E-14	488	622	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.6E-16	512	626	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.22E-17	525	625	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.5E-7	525	592	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.3	530	634	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	9.2E-6	563	592	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	11.621	563	595	IPR002110	Ankyrin repeat
SMART	SM00248	1600	602	632	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.42E-5	702	777	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.73	711	737	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	26	726	748	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.053	727	756	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.022	749	771	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.164	750	774	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.8E-4	751	771	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	46	829	851	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.199	830	859	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 874 aa Download sequence Send to blast
MEEAKSRWLR PNEIHAILYN HKYFTIYVKP VNLPQSGTIV LFDRKMLRNF RKDGHNWKKK 60 NDGKTVKEAH EHLKVGNEER IHVYYAHGED SPTFVRRCYW LLDKSLEHIV LVHYRETQEL 120 QGSPVTPVNS NNSSSVSDPS APWLLSEELD SGANKSYCAG ENELSEPGDG LTVKNHEKRL 180 HDINTLEWEE LLITNDSKGD IVSCYDQQNQ VVGNGFISGG ASVISAEMSA FDNLTNPTSR 240 SDNVQFNLLD SPYVPTVEKT TYDSLDVLVN DGLHSQDSFG RWINQVMADP PGSVEDPALE 300 SSSLAAQNSF ASPSADHLQS SVPHQIFNIT DLSPAWAFSN EKTKILITGF FHQEYLHLAK 360 SDLLCICGDV CLRAEIVQAG VYRCFVPPHL PRVVNLFMSI DGHKPISLVL NFEYRAPVLS 420 DPIISSEENK WEEFQAQMRL AYLLFSSSKN LNIVSNKVLP NALKEAKKFS HRTSHISNSW 480 AYLMKAVEDN KTPLPLAKDG LFELILKNRL KDWLLEKVVA SSTTKEYDAY GQGVIHLCAI 540 LEYTWAVRLF SWSGLSLDFR DRRGWTALHW AAYCGREKMV AVLLSAGAKP NLVTDPSSEN 600 PGGCTAADLA AMKGYDGLAA YLSEKALVEQ FKDMSMAGNA SGSLQTSSNY AGNSENLSED 660 EIHLKDTLAA YRTAADAAAR IQAAFRENSL KLKAKAVQYS TPEAEARGII AALKIQHAFR 720 NYDTRKKIKA AARIQYRFRT WKMRQEFLSL RRQAIKIQAA FRGFQVRRQY RKVLWSVGVL 780 EKAVLRWRFK RRGLRGLNVA PVEVDVDQKQ ESDTEEDFYR ASRKQAEERI ERSVVRVQAM 840 FRSKKAQEEY SRMKLTHIEA KLEFEELLNP DLDS

Sequence ? help Back to Top

Protein Sequence Length: 874 aa Download sequence Send to blast

MEEAKSRWLR PNEIHAILYN HKYFTIYVKP VNLPQSGTIV LFDRKMLRNF RKDGHNWKKK  60
NDGKTVKEAH EHLKVGNEER IHVYYAHGED SPTFVRRCYW LLDKSLEHIV LVHYRETQEL  120
QGSPVTPVNS NNSSSVSDPS APWLLSEELD SGANKSYCAG ENELSEPGDG LTVKNHEKRL  180
HDINTLEWEE LLITNDSKGD IVSCYDQQNQ VVGNGFISGG ASVISAEMSA FDNLTNPTSR  240
SDNVQFNLLD SPYVPTVEKT TYDSLDVLVN DGLHSQDSFG RWINQVMADP PGSVEDPALE  300
SSSLAAQNSF ASPSADHLQS SVPHQIFNIT DLSPAWAFSN EKTKILITGF FHQEYLHLAK  360
SDLLCICGDV CLRAEIVQAG VYRCFVPPHL PRVVNLFMSI DGHKPISLVL NFEYRAPVLS  420
DPIISSEENK WEEFQAQMRL AYLLFSSSKN LNIVSNKVLP NALKEAKKFS HRTSHISNSW  480
AYLMKAVEDN KTPLPLAKDG LFELILKNRL KDWLLEKVVA SSTTKEYDAY GQGVIHLCAI  540
LEYTWAVRLF SWSGLSLDFR DRRGWTALHW AAYCGREKMV AVLLSAGAKP NLVTDPSSEN  600
PGGCTAADLA AMKGYDGLAA YLSEKALVEQ FKDMSMAGNA SGSLQTSSNY AGNSENLSED  660
EIHLKDTLAA YRTAADAAAR IQAAFRENSL KLKAKAVQYS TPEAEARGII AALKIQHAFR  720
NYDTRKKIKA AARIQYRFRT WKMRQEFLSL RRQAIKIQAA FRGFQVRRQY RKVLWSVGVL  780
EKAVLRWRFK RRGLRGLNVA PVEVDVDQKQ ESDTEEDFYR ASRKQAEERI ERSVVRVQAM  840
FRSKKAQEEY SRMKLTHIEA KLEFEELLNP DLDS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016647596.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208139	1e-38	AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008223308.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
Refseq	XP_016647596.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X3
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A251QWG4	0.0	A0A251QWG4_PRUPE; Uncharacterized protein
STRING	XP_008223308.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]