PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016647780.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 1159aa    MW: 128375 Da    PI: 6.5432
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016647780.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.73.8e-22136237199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++++
  XP_016647780.1 136 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDTVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI--RDEK 227
                     99*****************************9445444.38************************************************..5688 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     ++l+++++r+
  XP_016647780.1 228 QQLLLGIRRA 237
                     889****997 PP
2Auxin_resp116.32.6e-38262345183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+++s+F+v+YnPras+seFv++++k+ ka   +++s+GmRf+m+fete+s +rr++Gt++g+sdld+vrW+nS+Wr+L+
  XP_016647780.1 262 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAACgNQLSLGMRFRMMFETEESGTRRYMGTITGISDLDSVRWKNSQWRNLQ 345
                     79****************************9887766*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-43125265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-41127251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-18135227No hitNo description
PROSITE profilePS5086311.899136238IPR003340B3 DNA binding domain
PfamPF023623.2E-20136237IPR003340B3 DNA binding domain
SMARTSM010191.9E-22136238IPR003340B3 DNA binding domain
PfamPF065077.6E-34262345IPR010525Auxin response factor
PROSITE profilePS5174524.94610461131IPR000270PB1 domain
SuperFamilySSF542771.18E-510641124No hitNo description
PfamPF023092.0E-610931131IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1159 aa     Download sequence    Send to blast
MKPPANGAGA AAANGPSNSC EGGENVKIIN PELWQACAGP LVNLPPAGTH VVYFPQGHSE  60
QVAASMKKDV DGQIPNYPNL PSKLLCLLHN VTLHADPETD EVYAQMTLQP VSSFDKDALL  120
RSDLALKSNK PQPEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD  180
LHDTVWTFRH IYRGQPKRHL LTTGWSLFVS GKRLFAGDSV LFIRDEKQQL LLGIRRANRQ  240
PTNLSSSVLS SDSMHIGILA AAAHAAANNS PFTVFYNPRA SPSEFVIPLA KYYKAACGNQ  300
LSLGMRFRMM FETEESGTRR YMGTITGISD LDSVRWKNSQ WRNLQVGWDE STAGERRNRV  360
SMWEIEPVTA PFFICPPPFF RNSTSSLLSQ LNLYEESSDL DNLFKRTMPW LGDDMCMKDP  420
QVLPGLSLVQ WMNMQQNSSA GNSIQPNYMN SFPGSALQNL AGADLSRQLG MSGPQIPQLS  480
NLQFNAQRIP QQAQQLDQLQ KLPSTMNPLA SMIQRQQQLG DITQQPRQNS FNQSLPSSQV  540
QSQLLQPQTL VQTNSILQQQ SSSQNHLQRN LPQNLQQHQQ QQQQQLHQQQ QQLHQQQSTT  600
AQQLHQQQQQ HQQQQPQHQQ QQQHQQQIAG QNQQQFQSQL PDQINQQLQH LSDNQLQLQL  660
LQKLQQQQQS LLTQQALQQP AQLIQLQDQQ RQLLDVSQSF SRPLTPTQIQ DMPQMAPTSH  720
PQSRTMPQQL TKNNNSQTNV RFSHPPQQPK LQQQQPVMVP EMSGHMGLLP TPTTNQLSTA  780
VSNVMTGGAG AGQSGITDEV PSCSNSPSTN NCPSLIQPLM NNRAHRNSLV GEDMAQSATT  840
ILSPSAIETM PLNGNLLKDF QLKSDVKPSV NIASNQSQGI LTAQTYLNSA AVQTDYLDTS  900
SSTTSVGISQ NDVNLQQNNA PLSFNPQSML FREASQEGEV QADHRNNVSY GSNIDGQLGI  960
PLNPDPMLAK GTVGLGKDFS NNLSSGGMIG NYENAKDAQQ ELSSSMVSQS FGVPDMAFNS  1020
IDSTINDSGF LDSGPWPPAP QFQRMRTYTK VYKRGAVGRS IDIARYSGYG ELKQDLARRF  1080
GIEGQLEDRG RVGWKLVYVD HESDVLLVGD DPWEEFVNCV RYIKILSPQE VQQMSLDGDF  1140
GGNAVLPNQA CSSSDGGNA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1702136643388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016647780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016647780.10.0PREDICTED: auxin response factor 19-like
TrEMBLA0A2L1GH200.0A0A2L1GH20_9ROSA; Auxin response factor
STRINGEMJ266240.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68233044
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19