PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016647805.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 362aa    MW: 39822.4 Da    PI: 6.325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016647805.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.32.1e-16169215455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn+ E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  XP_016647805.1 169 VHNMSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 215
                     6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-20162225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-21162225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.873165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.02E-17168219No hitNo description
PfamPF000108.9E-14169215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-18171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MADLYGTAPD SEEISNILSQ LLHGHGSSAS SSSSCMPFKP TYTHLLHSSV APHHVTTSSE  60
VLISETRHED YHRFARSEDR RVVDGNSAAA VVESSSGFDF TDSGGYFQAE VKEGMESDAN  120
TSLKGRRISS ENDLGDFSYD SEKGHDRSEV PLNPVPPRSL SKRSRAAEVH NMSEKRRRSR  180
INEKMKALQN LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LTMKNGLSLH PMCLPGVMQP  240
MQLPHMGLGL EEGSNKFPKS SRGISPFYEN EENPMQSAFN ISPGCAISNQ PMVLPSVANV  300
PTSEATFGFE PSIQALYRPF SVPSSSKELF RDGEPRAKLD TSETGKNSSS HVDILSTKRP  360
DV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016647805.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016647805.10.0PREDICTED: transcription factor SPATULA-like isoform X1
TrEMBLA0A314ZED90.0A0A314ZED9_PRUYE; Transcription factor SPATULA-like isoform X1
STRINGXP_008220349.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.11e-44bHLH family protein