PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016647953.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB_related

Protein Properties

Length: 1142aa MW: 127454 Da PI: 8.9352

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016647953.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.2	2.1e-09	46	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+eE e +++a +++G++ Wk++a+ + +R+ +++ XP_016647953.1 46 QWTKEELENFYEAYRKYGKD-WKKVASVVR-HRSVEMV 81 6***************99.******9.9998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	10.945	42	93	IPR017884	SANT domain
SuperFamily	SSF46689	6.65E-11	43	91	IPR009057	Homeodomain-like
SMART	SM00717	1.9E-6	43	91	IPR001005	SANT/Myb domain
Pfam	PF00249	5.3E-8	46	81	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.9E-5	46	80	IPR009057	Homeodomain-like
CDD	cd00167	2.29E-7	47	81	No hit	No description
Pfam	PF06584	2.9E-32	628	728	IPR033471	DIRP domain
SMART	SM01135	1.6E-56	628	729	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005730	Cellular Component	nucleolus
GO:0016592	Cellular Component	mediator complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1142 aa Download sequence Send to blast
MAPSRKSRSV NKRFSYMNEA ASNKYGENAN KTGQKKRKLS DMLGPQWTKE ELENFYEAYR 60 KYGKDWKKVA SVVRHRSVEM VEALYSMNKA YLSLPEGVAS VVGLIAMMTD HYCILGGSDS 120 EQENNEDAET SRKPQKHARS KLRSESSKGL EGHIPDFSES HPMASTSDCL SLLKNRRSGI 180 RPHAVKKRTP RVPVAYSNDQ DNGRKYSSPA RQGLKLNADA NNNDVAHEIA LALTEASHRG 240 GSPLVSWTPK RKAKGTTPSP VRNGERMCAE SEMINARLHG CEMDEGGCEL SLGSTEADND 300 YYDRNEKYAM GREGTGTLEV QQRRKRYFVK KKEDDESKNK HVEDIKEACS GTEEGQKLGA 360 IKGKLDTKVA KSARSFYKDT RKKSKKAPIG GDEGSPFDAL QTLADLSLMM PEAADTESSA 420 HVKEDNFNIA NKSKLKGSRP IPGVEHAAFK TSKPGKLGEG VHQSNSGLQK GKQKSLSFKI 480 YNEAQTDCYA SDNEKIEATL EVKKSASKGK RSSHYTTHPK QGKLVKKTLW NASSATDRKR 540 EENNSGLSTV QVPSANLANL PTKNRGKWEM DMQKSSMQKD TKSPESVLDD QPDKLVPSFR 600 NRELNIKEKL SNCLSRYQVR RWCAFEWFYS AIDYPWFAKR EFVEYLDHVG LGHVPRLTRV 660 EWGVIRSSLG RPRRFSEQFL KEEKEKLNQY RESVRTHYAE LNAGTRDGLP TDLARPLSVG 720 QHVIAFHPRA REIHNGIVLT VDHSRCSVQF DQSELGVEYI MDVDCMPLHP AENLPASFRK 780 HNVTVNKYIE NLKELKINEQ LKGGTTKGYM KISSNDKLVK SSSFNVQAKV GPGETASTQV 840 ANYQPSIPAQ TQAKEADVQA IYELTRALDK KEAVVSELRR MNDEVFENQS DEDNSIRDSE 900 PFKKEYAAVL LQLSQVNDQV SSALLCLRQR NTYRGSSPHT VVTPVDNLSG PGSHSNSYGY 960 SCDVQESASH MREIVESSRA KAHKMVDAAM QAFSSLRKEN NFDKIEEVID FVSNRLSDDA 1020 GMLAMGSSTT PADPIPFSQD QLTSCTSKPL ATGCAHDPPK SNNLSNQSEE KLLSDLIVNC 1080 VAAFMMIQTC TARQFPPADV AQVLDHAVTS LQPFCPQNLS VYGEIQKCMG IIRNQIMALV 1140 PT

Sequence ? help Back to Top

Protein Sequence Length: 1142 aa Download sequence Send to blast

MAPSRKSRSV NKRFSYMNEA ASNKYGENAN KTGQKKRKLS DMLGPQWTKE ELENFYEAYR  60
KYGKDWKKVA SVVRHRSVEM VEALYSMNKA YLSLPEGVAS VVGLIAMMTD HYCILGGSDS  120
EQENNEDAET SRKPQKHARS KLRSESSKGL EGHIPDFSES HPMASTSDCL SLLKNRRSGI  180
RPHAVKKRTP RVPVAYSNDQ DNGRKYSSPA RQGLKLNADA NNNDVAHEIA LALTEASHRG  240
GSPLVSWTPK RKAKGTTPSP VRNGERMCAE SEMINARLHG CEMDEGGCEL SLGSTEADND  300
YYDRNEKYAM GREGTGTLEV QQRRKRYFVK KKEDDESKNK HVEDIKEACS GTEEGQKLGA  360
IKGKLDTKVA KSARSFYKDT RKKSKKAPIG GDEGSPFDAL QTLADLSLMM PEAADTESSA  420
HVKEDNFNIA NKSKLKGSRP IPGVEHAAFK TSKPGKLGEG VHQSNSGLQK GKQKSLSFKI  480
YNEAQTDCYA SDNEKIEATL EVKKSASKGK RSSHYTTHPK QGKLVKKTLW NASSATDRKR  540
EENNSGLSTV QVPSANLANL PTKNRGKWEM DMQKSSMQKD TKSPESVLDD QPDKLVPSFR  600
NRELNIKEKL SNCLSRYQVR RWCAFEWFYS AIDYPWFAKR EFVEYLDHVG LGHVPRLTRV  660
EWGVIRSSLG RPRRFSEQFL KEEKEKLNQY RESVRTHYAE LNAGTRDGLP TDLARPLSVG  720
QHVIAFHPRA REIHNGIVLT VDHSRCSVQF DQSELGVEYI MDVDCMPLHP AENLPASFRK  780
HNVTVNKYIE NLKELKINEQ LKGGTTKGYM KISSNDKLVK SSSFNVQAKV GPGETASTQV  840
ANYQPSIPAQ TQAKEADVQA IYELTRALDK KEAVVSELRR MNDEVFENQS DEDNSIRDSE  900
PFKKEYAAVL LQLSQVNDQV SSALLCLRQR NTYRGSSPHT VVTPVDNLSG PGSHSNSYGY  960
SCDVQESASH MREIVESSRA KAHKMVDAAM QAFSSLRKEN NFDKIEEVID FVSNRLSDDA  1020
GMLAMGSSTT PADPIPFSQD QLTSCTSKPL ATGCAHDPPK SNNLSNQSEE KLLSDLIVNC  1080
VAAFMMIQTC TARQFPPADV AQVLDHAVTS LQPFCPQNLS VYGEIQKCMG IIRNQIMALV  1140
PT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016647953.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM437233	1e-51	AM437233.2 Vitis vinifera contig VV78X223624.13, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016647953.1	0.0	PREDICTED: protein ALWAYS EARLY 3 isoform X2
Swissprot	Q6A332	0.0	ALY3_ARATH; Protein ALWAYS EARLY 3
TrEMBL	A0A251QWZ3	0.0	A0A251QWZ3_PRUPE; Uncharacterized protein
STRING	XP_008223159.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]