PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016648155.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HB-other

Protein Properties

Length: 1772aa MW: 199185 Da PI: 5.3167

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016648155.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.9	1.7e-18	33	88	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps++ r+eL++klgLt+rq ++WF+ rR k+kk XP_016648155.1 33 PKRQMKTPFQLETLEKAYALETYPSEAIRAELSEKLGLTDRQLQMWFCHRRLKDKK 88 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-18	14	89	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.28E-16	20	89	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.714	29	89	IPR001356	Homeobox domain
SMART	SM00389	2.4E-18	31	93	IPR001356	Homeobox domain
Pfam	PF00046	4.0E-16	33	88	IPR001356	Homeobox domain
CDD	cd00086	3.56E-14	34	89	No hit	No description
SMART	SM00571	2.0E-21	549	608	IPR018501	DDT domain
PROSITE profile	PS50827	16.943	549	608	IPR018501	DDT domain
Pfam	PF02791	1.5E-17	550	605	IPR018501	DDT domain
Pfam	PF05066	2.6E-15	744	812	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15613	4.2E-14	1143	1215	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1772 aa Download sequence Send to blast
MEGASEGENP TKNHENNNSN GKFNNSSEGQ SKPKRQMKTP FQLETLEKAY ALETYPSEAI 60 RAELSEKLGL TDRQLQMWFC HRRLKDKKEG GPAKKQRKSV PTLPEPPIDD LAHGSEPGSD 120 YGSGSGSGSS PFGHAELRNV VSRSGADDVP MRRRYYESPQ SILELRAIAC VEAQLGEPLR 180 EDGPVLGVEF DRLPPDAFGA PIAVAEQQKR AAHALEGKYE RHDAKPNKAT PRALHEYPFL 240 QDHSSIRSDA YGQAAQSHFQ DSPIDGPSAR ASSFAVGNEP LSRVHGVHGH GHVSRVRLLS 300 QQERQAVAFP SPGDDGCVPQ RDSFTNVRVN TQFSDPPTVA PENSNALSDG QINDSMLRME 360 RKRKSEEARI AKEVEAHEIR IRKELEKQDI LRRKNEERMR KEMERHDRER RKEEERLMRE 420 RQREEERSKR EQKREIERRE KFLQKEYIRA EKRRQKEELR KEREAVRRKA ALEKATARRL 480 AKESMELIED EQLELMELAA ASKGLSSIIC IDLDTLQNLD AFRDSLAAFP PKSVQLKRPF 540 AVQPWINSEE NIGNFLMVWR FLITFADVLE LWPFTLDEFV QAFHDYDSRL LGEIHVALLR 600 LIIKDIEDVA RTPSTGLGVN QNGAANPGGG HPQIVEGAYA WGFDIRNWQQ HLNLLTWPEI 660 FRQLALSAGF GPRLKKRSTA WSYSPDNDEV LFSIIYYLFF HRNSSPSSVK ERVKGKSAAE 720 NAFAIMQEKG LLAPRKSRHR LTPGTVKFAA FHVLSLEGNK GLTVLELADK IQKSGLRDLT 780 TSKTPEASIS VALTRDTKLF ERIAPSTYRV RAAYRKDPAD AEAILSAARK KIQIFENGFL 840 AAEDADDVER DDADEVERDE DFECDEVDDD PEVDDLATPS VAKKSPDDYN EVITFSENGK 900 DLCNDVALNV QNEFEKDVSS SPVSGSKDAN CPSASSKQCV SGADISASNL DQENMEIDES 960 KSGESWVQGL TEGEYSXXXX XXXMXLVTLI GVANEGNSIR VVLEDRLEAA NALKKQMWAE 1020 AQLDKSRLKE ENIGKLDFPS FVGGKSETQV IGVEDGQSPV RDVDNRNNEA SPGTAENQKS 1080 IHGSQGVQNQ LNGLPVERTL GAQDISMGPD NFLSQQLAYA SKRSRSQLKS YIAHRAEEMY 1140 AYRSLPLGQD RRHNRYWQFV ASASSNDPGS GRIFIELNNG SWRLIDTEEA FDALLTSLDT 1200 RGIRESHLRL MLQKIEASFK ENFRKTAHCP NNAGPSKNRV KNEADMDSSP DCPSGFDSPG 1260 STVCALNSDT AETSSSFRIE LDRNEAEKRA ALRRYQDFQK WMWKECFSSS TFCAMKYAKK 1320 RCRSLFDVCD FCLSCYYFED SHCAFCHQTF SAFYANFNFS EHVIQCKEKR KLEPWDSHIP 1380 CTSLPLARRL LKALIAHVEV SIPPEALQSF WTEDRRKTWG GKLNASSSTE ELLQILTLLE 1440 TAVKRDFLSS NFAATEELLG TGKQSEVFVP DFLDSGSVPL LPWIPHTTAA VALRLHEMDS 1500 SITHIQLEKA EPNGDKEVKE YLKLPMRLAP LKESEQTEVG HNEYIREENN THLKSARNSF 1560 RRGRGGREQG RGKKWQRKVN NSKSGASRQK GSGNLSQGFR PVGKRTQGQG SARGRRTVRK 1620 RRTKDRAVEG TPLGRMTDVH SSPESGGESP RNLGEEWDDE KIDMIHMKGD EQGEGYEQAE 1680 ALESEDDDQA VGYEQGNWET GFDGTSSGWH EGLLEASDED MDASEDDNNG IEEVRDEDSE 1740 GDVDMSDASD EIQNKITNDD GSDSAVSDDY SD

Sequence ? help Back to Top

Protein Sequence Length: 1772 aa Download sequence Send to blast

MEGASEGENP TKNHENNNSN GKFNNSSEGQ SKPKRQMKTP FQLETLEKAY ALETYPSEAI  60
RAELSEKLGL TDRQLQMWFC HRRLKDKKEG GPAKKQRKSV PTLPEPPIDD LAHGSEPGSD  120
YGSGSGSGSS PFGHAELRNV VSRSGADDVP MRRRYYESPQ SILELRAIAC VEAQLGEPLR  180
EDGPVLGVEF DRLPPDAFGA PIAVAEQQKR AAHALEGKYE RHDAKPNKAT PRALHEYPFL  240
QDHSSIRSDA YGQAAQSHFQ DSPIDGPSAR ASSFAVGNEP LSRVHGVHGH GHVSRVRLLS  300
QQERQAVAFP SPGDDGCVPQ RDSFTNVRVN TQFSDPPTVA PENSNALSDG QINDSMLRME  360
RKRKSEEARI AKEVEAHEIR IRKELEKQDI LRRKNEERMR KEMERHDRER RKEEERLMRE  420
RQREEERSKR EQKREIERRE KFLQKEYIRA EKRRQKEELR KEREAVRRKA ALEKATARRL  480
AKESMELIED EQLELMELAA ASKGLSSIIC IDLDTLQNLD AFRDSLAAFP PKSVQLKRPF  540
AVQPWINSEE NIGNFLMVWR FLITFADVLE LWPFTLDEFV QAFHDYDSRL LGEIHVALLR  600
LIIKDIEDVA RTPSTGLGVN QNGAANPGGG HPQIVEGAYA WGFDIRNWQQ HLNLLTWPEI  660
FRQLALSAGF GPRLKKRSTA WSYSPDNDEV LFSIIYYLFF HRNSSPSSVK ERVKGKSAAE  720
NAFAIMQEKG LLAPRKSRHR LTPGTVKFAA FHVLSLEGNK GLTVLELADK IQKSGLRDLT  780
TSKTPEASIS VALTRDTKLF ERIAPSTYRV RAAYRKDPAD AEAILSAARK KIQIFENGFL  840
AAEDADDVER DDADEVERDE DFECDEVDDD PEVDDLATPS VAKKSPDDYN EVITFSENGK  900
DLCNDVALNV QNEFEKDVSS SPVSGSKDAN CPSASSKQCV SGADISASNL DQENMEIDES  960
KSGESWVQGL TEGEYSXXXX XXXMXLVTLI GVANEGNSIR VVLEDRLEAA NALKKQMWAE  1020
AQLDKSRLKE ENIGKLDFPS FVGGKSETQV IGVEDGQSPV RDVDNRNNEA SPGTAENQKS  1080
IHGSQGVQNQ LNGLPVERTL GAQDISMGPD NFLSQQLAYA SKRSRSQLKS YIAHRAEEMY  1140
AYRSLPLGQD RRHNRYWQFV ASASSNDPGS GRIFIELNNG SWRLIDTEEA FDALLTSLDT  1200
RGIRESHLRL MLQKIEASFK ENFRKTAHCP NNAGPSKNRV KNEADMDSSP DCPSGFDSPG  1260
STVCALNSDT AETSSSFRIE LDRNEAEKRA ALRRYQDFQK WMWKECFSSS TFCAMKYAKK  1320
RCRSLFDVCD FCLSCYYFED SHCAFCHQTF SAFYANFNFS EHVIQCKEKR KLEPWDSHIP  1380
CTSLPLARRL LKALIAHVEV SIPPEALQSF WTEDRRKTWG GKLNASSSTE ELLQILTLLE  1440
TAVKRDFLSS NFAATEELLG TGKQSEVFVP DFLDSGSVPL LPWIPHTTAA VALRLHEMDS  1500
SITHIQLEKA EPNGDKEVKE YLKLPMRLAP LKESEQTEVG HNEYIREENN THLKSARNSF  1560
RRGRGGREQG RGKKWQRKVN NSKSGASRQK GSGNLSQGFR PVGKRTQGQG SARGRRTVRK  1620
RRTKDRAVEG TPLGRMTDVH SSPESGGESP RNLGEEWDDE KIDMIHMKGD EQGEGYEQAE  1680
ALESEDDDQA VGYEQGNWET GFDGTSSGWH EGLLEASDED MDASEDDNNG IEEVRDEDSE  1740
GDVDMSDASD EIQNKITNDD GSDSAVSDDY SD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	88	RRLKDKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016648155.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016648155.1	0.0	PREDICTED: LOW QUALITY PROTEIN: homeobox-DDT domain protein RLT1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A251PG33	0.0	A0A251PG33_PRUPE; Uncharacterized protein
STRING	XP_008225150.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1