PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016648383.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 174aa MW: 18976.3 Da PI: 8.3887

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016648383.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.7	7.1e-42	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca+dCv+ap +p+kfanvhk+FGasnv k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la XP_016648383.1 14 PCAACKLLRRRCAQDCVFAPXXXXXEPQKFANVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLA 108 7********************************************************************************************** PP DUF260 96 llkee 100 l+++e XP_016648383.1 109 LAQAE 113 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.783	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-41	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MKENGSRKQG APSPCAACKL LRRRCAQDCV FAPXXXXXEP QKFANVHKVF GASNVNKMLQ 60 ELPEHQRGDA VSSMVYEANA RVRDPVYGCV GAISSLQQQI DLLQTQLALA QAEVVHLRVR 120 QTASFSNHGL SPASPSNSGS PSSKFMGSQT RPIFDMDMMV DHTSLGLGES MWSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-46	10	115	7	112	LOB family transfactor Ramosa2.1
5ly0_B	1e-46	10	115	7	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016648383.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016648383.1	1e-123	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SHE9	2e-73	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A314YWZ3	1e-120	A0A314YWZ3_PRUYE; LOB domain-containing protein 4
STRING	XP_009353911.1	1e-117	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-65	LOB domain-containing protein 4