PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016648425.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 275aa MW: 30435.7 Da PI: 8.7035

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016648425.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113.5	9.2e-36	39	97	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + + lkcprC+stntkfCyynny+ +qPr+fC+aC+r+WtkGG+lrnvPvGggr++++ XP_016648425.1 39 QPEPLKCPRCESTNTKFCYYNNYNKQQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRL 97 56889***********************************************9776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-23	40	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-31	42	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.149	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MGLSTKQVSS DGLDWSQASL LQGQTFQLPK SPSAMRRQQP EPLKCPRCES TNTKFCYYNN 60 YNKQQPRHFC RACKRHWTKG GTLRNVPVGG GRKNKRLKKS SNSTSASAAA TTTTTNSAAI 120 DQTDHQEQKP MSQVFYQALP QQNLDNTIIF SSSSSPGLSA STLPFLHQSR NLSFPFSSSI 180 STTSSSFDTN LSSISTSLQS SNVYNYATAA TEDQFKAMEE PTITSIMPNI SQPNWKVPTS 240 SNGMDVYSND WNWEDIETLV STDLNLPWDG SDIKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016648425.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016648425.1	0.0	PREDICTED: dof zinc finger protein DOF1.4-like
TrEMBL	A0A314YNH9	1e-161	A0A314YNH9_PRUYE; Dof zinc finger protein DOF1.4
STRING	XP_008225032.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5107	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07640.1	2e-27	Dof family protein