PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016648510.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 341aa    MW: 38622.2 Da    PI: 6.6063
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016648510.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.45.9e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde l++ ++ +G g+W++I++  g+ R++k+c++rw +yl
   XP_016648510.1 13 RGLWSPEEDEMLINHINTYGHGSWSSIPKLAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP
2Myb_DNA-binding50.64.6e-1666109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+++++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
   XP_016648510.1  66 RGSFSEQEERTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109
                      899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-27463IPR009057Homeodomain-like
PROSITE profilePS5129417.43860IPR017930Myb domain
SuperFamilySSF466894.21E-3010107IPR009057Homeodomain-like
SMARTSM007171.3E-131262IPR001005SANT/Myb domain
PfamPF002491.7E-151360IPR001005SANT/Myb domain
CDDcd001677.39E-121660No hitNo description
PROSITE profilePS5129425.64361115IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2564116IPR009057Homeodomain-like
SMARTSM007173.8E-1565113IPR001005SANT/Myb domain
PfamPF002496.8E-1566109IPR001005SANT/Myb domain
CDDcd001677.05E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MGHKCCSKQK VKRGLWSPEE DEMLINHINT YGHGSWSSIP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGSFS EQEERTIIDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLPS SKTNHSTNNN ISECSFYPTL PKPSYFFPVN SHVSDTSIDI LKAHFQALSS  180
ISSSPDTNHI NPDHSLHGSS TLSSVHEYRN HNTVWTLQEK LNSNAFMEAM NQPSVGASVP  240
TSSCHSYPLS ELEIVNENCK WGTGNFEPTK PDEEMFMQPQ EEKACEVGIE KANMLIDEQT  300
NMDASFGSSN SDFDFVESTQ LPYGLYNYHL SPMMDQLQWN G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-30131157108B-MYB
1h8a_C4e-301311527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016648510.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016648510.10.0PREDICTED: myb-related protein Myb4-like
TrEMBLM5WLA00.0M5WLA0_PRUPE; Uncharacterized protein
STRINGEMJ145770.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.12e-83myb domain protein 67