PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016648703.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

GRAS

Protein Properties

Length: 419aa MW: 46617.4 Da PI: 5.009

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016648703.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	443.1	2e-135	49	419	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 l+e+L +cA+a++++d++ ++ l+++l++++s +g+p+qRl ay++e+L arla+s+s++y+al+++e + s+e l+++++++e++P++kf++ XP_016648703.1 49 LKEVLCACAKALANSDMSTTELLISNLRQMVSVSGEPIQRLGAYILEGLVARLASSGSSIYAALRCKEPA---SAELLSYMHILYEICPYFKFGY 140 5789***************************************************************9...9***************** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188 + aN aI ea++ e+rvHiiDf++ qG QW++L+qaLa+Rp+gpp++RiTg+++++s+ + l +g+rL+++Ae+++vpfef++ + + ++ XP_016648703.1 141 MSANGAIAEAMKDESRVHIIDFQVAQGSQWITLIQALAARPGGPPQIRITGIDDSTSSyaRGGGLGLVGQRLSRLAESCKVPFEFHA-AGISASE 234 **************************************************998899999********************.7889* PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283 ++le+++v+pgEa+aVn++++lh+++desvs +++rd++L+lvkslsPkvv++veqe+++n+++Fl rf+e+l+y+ a+fds+++ lpre++eri XP_016648703.1 235 VQLEDIEVRPGEAIAVNFAFMLHHMPDESVSCQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAPFLPRFAETLNYFRAIFDSIDVALPREHKERI 329 ********************************************************************************************* PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +vE+++l+reivn++aceg er+er e l+kW++r+ +aGF+p+pls+ ++ ++k+ll+ ++++ y++ee++g+l+lgW+++ Lv+ +aWr XP_016648703.1 330 NVEQHCLAREIVNIIACEGMERVERYELLSKWKSRFIMAGFSPYPLSSLVNGTIKTLLQSYSEK-YTLEERDGALYLGWMNQVLVASCAWR 419 **********************************************************65.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	69.26	23	400	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.9E-133	49	419	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MRELESVLLG NDLDALDMYA ITDELGPNQL SSEAENREQM MEMISRGDLK EVLCACAKAL 60 ANSDMSTTEL LISNLRQMVS VSGEPIQRLG AYILEGLVAR LASSGSSIYA ALRCKEPASA 120 ELLSYMHILY EICPYFKFGY MSANGAIAEA MKDESRVHII DFQVAQGSQW ITLIQALAAR 180 PGGPPQIRIT GIDDSTSSYA RGGGLGLVGQ RLSRLAESCK VPFEFHAAGI SASEVQLEDI 240 EVRPGEAIAV NFAFMLHHMP DESVSCQNHR DRLLRLVKSL SPKVVTLVEQ ESNTNTAPFL 300 PRFAETLNYF RAIFDSIDVA LPREHKERIN VEQHCLAREI VNIIACEGME RVERYELLSK 360 WKSRFIMAGF SPYPLSSLVN GTIKTLLQSY SEKYTLEERD GALYLGWMNQ VLVASCAWR

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MRELESVLLG NDLDALDMYA ITDELGPNQL SSEAENREQM MEMISRGDLK EVLCACAKAL  60
ANSDMSTTEL LISNLRQMVS VSGEPIQRLG AYILEGLVAR LASSGSSIYA ALRCKEPASA  120
ELLSYMHILY EICPYFKFGY MSANGAIAEA MKDESRVHII DFQVAQGSQW ITLIQALAAR  180
PGGPPQIRIT GIDDSTSSYA RGGGLGLVGQ RLSRLAESCK VPFEFHAAGI SASEVQLEDI  240
EVRPGEAIAV NFAFMLHHMP DESVSCQNHR DRLLRLVKSL SPKVVTLVEQ ESNTNTAPFL  300
PRFAETLNYF RAIFDSIDVA LPREHKERIN VEQHCLAREI VNIIACEGME RVERYELLSK  360
WKSRFIMAGF SPYPLSSLVN GTIKTLLQSY SEKYTLEERD GALYLGWMNQ VLVASCAWR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-65	51	419	6	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269\|PubMed:10817761}.
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_016648703.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016648703.1	0.0	PREDICTED: scarecrow-like transcription factor PAT1 isoform X2
Swissprot	Q8H125	0.0	SCL5_ARATH; Scarecrow-like protein 5
Swissprot	Q9LDL7	0.0	PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBL	A0A251PPW3	0.0	A0A251PPW3_PRUPE; Uncharacterized protein
STRING	XP_008227106.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48150.2	0.0	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Heyman J, et al. The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence. Nat Plants, 2016. 2(11): p. 16165 [PMID:27797356]