PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016648843.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 626aa    MW: 72359.5 Da    PI: 6.7063
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016648843.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.44.3e-22996590
            FAR1  5 eYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90
                    ++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC akl ++ke      +w+v+++++ HnHel 
  XP_016648843.1  9 NFARKNGFSIRKARSTESQNLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSVRCGCGAKLYLTKEIvdgVMQWYVSQFSNVHNHELL 96
                    69****************8888.******************************************998766779*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.7E-20996IPR004330FAR1 DNA binding domain
PfamPF105519.0E-25228321IPR018289MULE transposase domain
PROSITE profilePS509669.693500535IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-7505532IPR007527Zinc finger, SWIM-type
SMARTSM005751.9E-4510537IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MKEMIWAHNF ARKNGFSIRK ARSTESQNLG IYRRDFVCYR SGFNQPRKKA NVEHPRDRKS  60
VRCGCGAKLY LTKEIVDGVM QWYVSQFSNV HNHELLEDDQ VRLLPAYRKI QEVDQERILL  120
LSKAGFPVNR IVKVLELEKG VQPGQLPFIE KDVRNFVRTC KKTVQENDAL LNEKRENDML  180
ELLEACKAMT GRDPDFVYDY TIDENEKVEN IAWSFGDSIR AYTIFGDVVA FDTTYRSVTY  240
GLLLGVWFGI DNHGKAIFLG CVLLQDESSH SFAWALQAFM RFMRGRHPQT ILTDIDSGLR  300
DAIARELPNT KHVLCIWHIL SKISSWFSLP LGSQYENFKT EFDMLSQLES VEDFEHQWNI  360
LVARFGLVSD KHIALLYSYR ASWTFSYIRS YFLARTLTAE FSLSLESFLK RILNGQTCLQ  420
VFFEQVSIAA NLENQTREGM QYMHVKTGMP LEEHARNILT PYAFNVLQHE IVLSVQYATT  480
EMANGSYLVR HYKKLDGECL VIWMPDDEQI HCSCKEFEHS GILCRHSLRV LVVKNYFQLP  540
EKYFPLRWRV ESSLVSVDDQ NAQISSDGGA QAFHSLTASL LTESLISKDR FNYVHNELTS  600
LLEHVRNMPV IDEYAANAAA NNISEL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_016648843.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016648843.10.0PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLM5WX170.0M5WX17_PRUPE; Uncharacterized protein
STRINGXP_008229916.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]